Genome browser
Left panel allows selection of tracks to display in the genome browser. The JBrowse view by default contains Genbank annotation track [Genes], the structural annotation of newly defined RNA elements [Segments] and a track combining all microarray expression profiles [All conditions].
Additional tracks can be displayed using the left secondary tracks panel, including:
Click on the track label of expression profiles give information on the color legend of displayed biological conditions.
Additional tracks can be displayed using the left secondary tracks panel, including:
- Global RNAseq landscape: log2-read coverage of global RNA-Seq library
- 5'-end RNAseq landscape : log2-read coverage of 5’-end RNA-Seq library
- Transcription Start Sites: putative TSSs with predicted sigma factor motif
- PETRIN terminators: predicted intrinsic terminators
- Probes: probes of the high-density microarray used in the study
- Probe expression profiles: log2-expression signal for 32 group of biological conditions (normalized log2-expression signal of each probe)
- Gene expression profiles: log2-expression signal for 32 group of biological conditions (value computed for each genomic element as the median of normalized values of all probes)
- Flavo-1 RNA segments: RFAM predictions corresponding to Flavo-1 RNA element
Click on the track label of expression profiles give information on the color legend of displayed biological conditions.