Differential expression: Oxygen limitation [Anaer.vs.Ctrl]
Differentially expressed genes after 1h exposure to oxygen deprivation relative to standard condition (OD600nm=0.4, in TYES at 18°C and 200 rpm).
List of differentially expressed genomic elements (CDS and newly identified RNA elements).Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.
Reference samples: CS2_a, CS2_b
Test samples: Anaer_a, Anaer_b
Locus Tag | Name (v2) | Feature type | Location | Clusters | Base Expr. | Delta Expr. | Annotation | Chromosome order | Clusters order |
---|---|---|---|---|---|---|---|---|---|
THC0290_N_0001 | intra | 3409:3490 + | A1552 B523 C143 | 9.02 | 1.33 | new transcription segment | 3 | 2810 | |
THC0290_0009 | CDS | 8244:9227 - | A1710 B546 C143 | 12.02 | 1.15 | Band 7 family protein | 16 | 3142 | |
THC0290_N_0019 | 5prime | 25240:25332 + | A1244 B419 C125 | 12.15 | -1.43 | new transcription segment | 38 | 2342 | |
THC0290_N_0030 | 5prime | 49569:49619 + | A1713 B546 C143 | 10.36 | 1.79 | new transcription segment | 59 | 3152 | |
THC0290_0031 | yceA | CDS | 49620:50978 + | A1713 B546 C143 | 11.59 | 1.90 | Protein of unknown function YceA | 60 | 3151 |
THC0290_N_0031 | 5prime | 51080:51148 + | A1543 B522 C143 | 8.05 | 1.41 | new transcription segment | 61 | 2786 | |
THC0290_N_0033 | 3prime | 60521:60568 + | A691 B195 C50 | 5.30 | 1.18 | new transcription segment | 70 | 1497 | |
THC0290_0040 | ogt1 | CDS | 63488:63958 - | A1021 B328 C90 | 9.05 | 1.75 | Methylated-DNA--[protein]-cysteine S-methyltransferase | 76 | 1976 |
THC0290_N_0037 | Rfp4 | indep | 64013:64179 - | A699 B199 C52 | 13.92 | 3.69 | new transcription segment | 77 | 1517 |
THC0290_0041 | CDS | 64242:64637 - | A700 B199 C52 | 12.83 | 4.12 | Cytochrome c551/c552 family protein | 78 | 1523 | |
THC0290_0045 | CDS | 67822:68385 - | A588 B183 C44 | 11.97 | 1.09 | Protein of unknown function precursor | 83 | 927 | |
THC0290_0046 | CDS | 68389:68934 - | A588 B183 C44 | 12.26 | 1.19 | Probable ribosomal-protein-amino-adic N-acetyltransferase | 84 | 933 | |
THC0290_0047 | CDS | 68944:69930 - | A588 B183 C44 | 12.51 | 1.34 | Hypothetical lipoprotein precursor | 85 | 934 | |
THC0290_0048 | hemE | CDS | 69952:70974 - | A588 B183 C44 | 12.23 | 1.47 | Uroporphyrinogen decarboxylase | 87 | 931 |
THC0290_N_0040 | intra | 70975:71053 - | A588 B183 C44 | 11.66 | 1.73 | new transcription segment | 88 | 926 | |
THC0290_0049 | hemD | CDS | 71054:71716 - | A588 B183 C44 | 12.12 | 1.77 | Uroporphyrinogen-III synthase | 89 | 932 |
THC0290_0050 | hemC | CDS | 71716:72642 - | A110 B46 C16 | 11.90 | 1.32 | Hydroxymethylbilane synthase | 90 | 139 |
THC0290_0051 | hemA | CDS | 72711:73952 - | A111 B46 C16 | 12.39 | 1.47 | Glutamyl-tRNA reductase | 92 | 140 |
THC0290_0052 | CDS | 74181:75047 + | A1712 B546 C143 | 10.72 | 1.91 | Probable transcriptional regulator, AraC family | 94 | 3150 | |
THC0290_0053 | hemH | CDS | 75051:76070 + | A1096 B368 C108 | 11.70 | 1.26 | Ferrochelatase | 95 | 2117 |
THC0290_0054 | (hemJ) | CDS | 76103:76645 + | A1097 B368 C108 | 11.39 | 1.14 | Protoporphyrinogen IX oxidase | 96 | 2118 |
THC0290_0056 | crt | CDS | 78125:78907 + | A1095 B368 C108 | 11.52 | 1.12 | Probable 3-hydroxybutyryl-CoA dehydratase | 98 | 2116 |
THC0290_N_0047 | 3prime | 81395:81474 - | A941 B297 C82 | 7.73 | 1.18 | new transcription segment | 106 | 1880 | |
THC0290_0079 | CDS | 102454:102894 - | A484 B172 C44 | 14.17 | -1.00 | Protein of unknown function | 139 | 644 | |
THC0290_0080 | CDS | 102896:104074 - | A484 B172 C44 | 13.90 | -1.19 | Probable lipoprotein precursor | 140 | 642 | |
THC0290_N_0063 | repeated_region | 106984:108354 + | A736 B211 C55 | 9.46 | -1.03 | new transcription segment | 144 | 1609 | |
THC0290_N_0067 | intra | 110638:110698 - | A643 B183 C44 | 6.36 | -1.32 | new transcription segment | 152 | 1398 | |
THC0290_0092 | CDS | 120728:121453 + | A1511 B519 C143 | 9.33 | 1.12 | Probable cytochrome c oxidase biogenesis protein | 162 | 2731 | |
THC0290_N_0074 | 3prime | 129899:129947 + | A1188 B407 C123 | 6.46 | 1.62 | new transcription segment | 174 | 2228 | |
THC0290_N_0075 | Rfp8 | indep | 129929:130108 - | A1768 B546 C143 | 5.98 | -2.04 | new transcription segment | 175 | 3608 |
THC0290_0108 | CDS | 138173:140128 - | A1560 B526 C143 | 9.03 | 1.69 | Penicillin-binding protein | 187 | 2823 | |
THC0290_0109 | CDS | 140135:140650 - | A1762 B546 C143 | 9.89 | 1.69 | Hypothetical protein | 188 | 3390 | |
THC0290_0110 | CDS | 140658:140933 - | A1768 B546 C143 | 11.21 | 1.56 | Putative plasmid stabilization system protein | 189 | 3633 | |
THC0290_0116 | panC | CDS | 145223:146071 - | A605 B183 C44 | 10.83 | -1.53 | Pantoate--beta-alanine ligase | 195 | 1248 |
THC0290_0131 | CDS | 162019:162429 - | A598 B183 C44 | 10.15 | -1.34 | Protein of unknown function | 219 | 989 | |
THC0290_N_0092 | intra | 162430:162618 - | A456 B168 C44 | 9.54 | -1.09 | new transcription segment | 220 | 592 | |
THC0290_0134 | CDS | 164278:164808 + | A1448 B502 C142 | 8.39 | -1.12 | Probable transmembrane protein of unknown function | 227 | 2637 | |
THC0290_0142 | CDS | 176106:176972 - | A545 B180 C44 | 12.10 | -1.27 | Protein of unknown function | 241 | 770 | |
THC0290_N_0102 | intra | 176973:177041 - | A545 B180 C44 | 12.61 | -1.37 | new transcription segment | 242 | 771 | |
THC0290_0143 | CDS | 177042:178046 - | A853 B257 C70 | 11.95 | -1.62 | ATPase, MoxR family | 243 | 1774 | |
THC0290_N_0103 | 5prime | 178047:178088 - | A853 B257 C70 | 9.43 | -1.03 | new transcription segment | 244 | 1775 | |
THC0290_N_0108 | 3prime | 182582:182666 - | A793 B241 C67 | 4.58 | -1.37 | new transcription segment | 254 | 1682 | |
THC0290_0149 | CDS | 182667:183833 - | A819 B248 C68 | 12.41 | -1.22 | Probable alcohol dehydrogenase | 255 | 1722 | |
THC0290_N_0115 | 5prime | 191257:191300 - | A761 B226 C62 | 12.36 | -1.39 | new transcription segment | 264 | 1635 | |
THC0290_0159 | CDS | 197573:198358 + | A390 B149 C42 | 8.05 | -1.19 | Probable hydrolase | 274 | 500 | |
THC0290_0169 | CDS | 212865:213590 - | A544 B180 C44 | 11.11 | -1.14 | Glycosyl transferase, group 2 family protein | 296 | 766 | |
THC0290_N_0139 | intra | 222703:223027 - | A1083 B365 C107 | 12.55 | -1.16 | new transcription segment | 305 | 2065 | |
THC0290_0187 | CDS | 235708:236373 + | A1765 B546 C143 | 9.54 | 2.05 | Probable transmembrane protein of unknown function | 318 | 3559 | |
THC0290_N_0144 | intra | 237144:237208 + | A586 B183 C44 | 12.09 | -1.22 | new transcription segment | 320 | 914 | |
THC0290_N_0147 | 3prime | 244080:244141 + | A1670 B542 C143 | 8.55 | 1.40 | new transcription segment | 331 | 3059 | |
THC0290_N_0159 | intra | 254489:254544 - | A601 B183 C44 | 9.00 | -1.14 | new transcription segment | 349 | 1119 | |
THC0290_0204 | rnhA | CDS | 254545:255024 - | A601 B183 C44 | 9.04 | -1.13 | Ribonuclease HI | 350 | 1182 |
THC0290_0205 | purN | CDS | 255026:255595 - | A526 B180 C44 | 9.14 | -1.35 | Phosphoribosylglycinamide formyltransferase | 351 | 711 |
THC0290_0208 | rnc | CDS | 257618:258358 + | A600 B183 C44 | 10.37 | -1.69 | Ribonuclease III | 357 | 1113 |
THC0290_N_0164 | intra | 258359:258452 + | A601 B183 C44 | 9.93 | -1.37 | new transcription segment | 358 | 1120 | |
THC0290_N_0165 | 3prime | 260291:260539 - | A1451 B503 C142 | 9.59 | -1.11 | new transcription segment | 361 | 2643 | |
THC0290_0218 | CDS | 266397:266870 - | A337 B126 C35 | 9.15 | -1.21 | Protein of unknown function | 372 | 437 | |
THC0290_0220 | CDS | 267649:268050 - | A1790 B549 C143 | 10.19 | 1.40 | Hypothetical protein | 376 | 3842 | |
THC0290_N_0171 | intra | 268051:268199 - | A1790 B549 C143 | 11.43 | 1.05 | new transcription segment | 377 | 3845 | |
THC0290_0221 | CDS | 268200:268898 - | A1790 B549 C143 | 11.74 | 1.12 | Protein of unknown function precursor | 378 | 3844 | |
THC0290_0222 | CDS | 268913:269659 - | A1762 B546 C143 | 10.87 | 1.20 | Protein of unknown function precursor | 379 | 3403 | |
THC0290_0223 | ileS | CDS | 269844:273245 + | A544 B180 C44 | 11.67 | -1.06 | Isoleucine--tRNA ligase | 380 | 767 |
THC0290_N_0172 | 5prime | 273673:273853 + | A834 B252 C69 | 7.13 | -1.06 | new transcription segment | 382 | 1741 | |
THC0290_0237 | fpp1 | CDS | 288547:291963 - | A1062 B352 C104 | 9.29 | -1.58 | Psychrophilic metalloprotease Fpp1 precursor | 403 | 2030 |
THC0290_0238 | fpp2 | CDS | 292070:294898 - | A1062 B352 C104 | 11.79 | -2.31 | Psychrophilic metalloprotease Fpp2 precursor | 405 | 2031 |
THC0290_0241 | CDS | 297417:297623 - | A1450 B502 C142 | 11.22 | -1.10 | Biotin synthase | 409 | 2641 | |
THC0290_N_0189 | intra | 304144:304193 - | A678 B190 C47 | 9.16 | 1.27 | new transcription segment | 425 | 1469 | |
THC0290_0250 | CDS | 304194:304376 - | A357 B136 C39 | 10.06 | 1.17 | Hypothetical protein | 426 | 457 | |
THC0290_N_0190 | 5prime | 304377:304524 - | A357 B136 C39 | 10.06 | 1.27 | new transcription segment | 427 | 458 | |
THC0290_N_0200 | 3prime | 323909:323965 - | A141 B55 C18 | 6.04 | -2.15 | new transcription segment | 452 | 180 | |
THC0290_0266 | CDS | 323966:324199 - | A1463 B506 C142 | 7.74 | -2.15 | Transcriptional regulator, XRE family | 454 | 2657 | |
THC0290_0300 | CDS | 361814:364573 - | A1062 B352 C104 | 10.57 | -1.62 | Probable M36 fungalysin family metalloprotease precursor | 505 | 2029 | |
THC0290_0304 | CDS | 370460:371698 + | A1348 B467 C136 | 8.93 | -1.64 | Probable transmembrane protein of unknown function | 510 | 2500 | |
THC0290_0305 | CDS | 371748:372044 + | A1699 B546 C143 | 10.61 | -1.55 | Thioredoxin family protein | 511 | 3113 | |
THC0290_N_0222 | 3prime | 372045:372409 + | A1455 B504 C142 | 9.33 | -1.50 | new transcription segment | 512 | 2648 | |
THC0290_0308 | CDS | 373995:374993 - | A1099 B369 C108 | 10.87 | 1.02 | Probable ABC-type transport system, membrane fusion efflux lipoprotein precursor component | 515 | 2120 | |
THC0290_0312 | yggG | CDS | 381240:382067 + | A1762 B546 C143 | 13.42 | 1.31 | Putative secreted M48 family metalloprotease YggG precursor | 523 | 3398 |
THC0290_0313 | CDS | 382030:382551 + | A1109 B371 C109 | 12.89 | 1.09 | Probable acetyltransferase, GNAT family | 524 | 2136 | |
THC0290_N_0228 | intra | 382552:382823 + | A1109 B371 C109 | 12.31 | 1.01 | new transcription segment | 525 | 2137 | |
THC0290_N_0235 | 3prime | 393012:393683 - | A127 B53 C18 | 6.96 | -1.40 | new transcription segment | 538 | 160 | |
THC0290_0322 | CDS | 393684:394175 - | A1464 B506 C142 | 9.70 | -1.17 | Probable transmembrane protein of unknown function | 539 | 2658 | |
THC0290_N_0247 | 3prime | 416229:416973 - | A130 B53 C18 | 7.38 | -1.33 | new transcription segment | 562 | 164 | |
THC0290_0345 | CDS | 423213:423833 - | A605 B183 C44 | 12.30 | -1.34 | Protein of unknown function | 573 | 1254 | |
THC0290_N_0251 | 5prime | 423834:424019 - | A916 B284 C77 | 9.27 | -1.22 | new transcription segment | 574 | 1849 | |
THC0290_N_0257 | Rfp26 | indep | 430687:430866 + | A1686 B545 C143 | 6.30 | -1.54 | new transcription segment | 585 | 3091 |
THC0290_0357 | rimM | CDS | 440423:440947 + | A600 B183 C44 | 11.86 | -1.89 | 16S rRNA processing protein RimM | 595 | 1111 |
THC0290_N_0262 | intra | 440948:441076 + | A600 B183 C44 | 10.93 | -1.59 | new transcription segment | 596 | 1112 | |
THC0290_0358 | yfiC | CDS | 441077:441781 + | A600 B183 C44 | 10.07 | -1.45 | Protein of unknown function YfiC | 597 | 1057 |
THC0290_N_0263 | 3prime-PT | 441466:441936 - | A1760 B546 C143 | 8.44 | 1.14 | new transcription segment | 598 | 3375 | |
THC0290_N_0267 | 5prime | 446871:447017 + | A1762 B546 C143 | 10.75 | 2.07 | new transcription segment | 607 | 3396 | |
THC0290_0365 | CDS | 447018:447473 + | A1762 B546 C143 | 10.40 | 1.86 | Protein of unknown function | 608 | 3385 | |
THC0290_N_0268 | intra | 447474:447645 + | A1762 B546 C143 | 10.81 | 1.67 | new transcription segment | 609 | 3386 | |
THC0290_N_0271 | 3prime | 448838:448909 - | A1795 B549 C143 | 6.91 | 1.24 | new transcription segment | 614 | 3861 | |
THC0290_0367 | CDS | 448910:449260 - | A1795 B549 C143 | 9.54 | 1.07 | Protein of unknown function precursor | 616 | 3860 | |
THC0290_0380 | trmB | CDS | 463782:464456 + | A846 B256 C70 | 9.99 | -1.17 | tRNA (guanine-N(7)-)-methyltransferase | 630 | 1765 |
THC0290_N_0275 | intra | 464457:464504 + | A571 B183 C44 | 11.68 | -1.00 | new transcription segment | 631 | 845 | |
THC0290_N_0276 | 3prime | 465495:465656 - | A162 B61 C19 | 5.74 | -2.11 | new transcription segment | 634 | 202 | |
THC0290_N_0285 | 3prime | 482258:482799 + | A1362 B469 C136 | 6.63 | -1.06 | new transcription segment | 656 | 2525 | |
THC0290_0396 | CDS | 482475:482840 - | A1161 B397 C120 | 6.58 | -1.13 | Protein of unknown function | 657 | 2196 | |
THC0290_0406 | kdtA (waaA) | CDS | 496704:497933 - | A505 B177 C44 | 8.20 | -1.08 | 3-deoxy-D-manno-octulosonic-acid transferase | 676 | 674 |
THC0290_0428 | cat2 | CDS | 520020:521288 + | A1108 B371 C109 | 11.67 | 1.38 | 4-hydroxybutyrate coenzyme A transferase | 711 | 2135 |
THC0290_0429 | CDS | 521589:522020 + | A1509 B519 C143 | 9.16 | 2.22 | Hypothetical transmembrane protein | 712 | 2728 | |
THC0290_N_0309 | 3prime | 522021:522213 + | A1509 B519 C143 | 10.06 | 1.96 | new transcription segment | 713 | 2729 | |
THC0290_N_0310 | 3prime-PT | 522214:522414 + | A771 B233 C66 | 8.96 | 1.04 | new transcription segment | 714 | 1656 | |
THC0290_0430 | CDS | 522415:524397 + | A1765 B546 C143 | 10.19 | 1.09 | Cation-transporting ATPase, P-type | 715 | 3539 | |
THC0290_N_0311 | intra | 524398:524889 + | A1765 B546 C143 | 8.16 | 1.11 | new transcription segment | 716 | 3534 | |
THC0290_N_0320 | intra | 535997:536054 + | A1607 B535 C143 | 9.59 | 1.09 | new transcription segment | 736 | 2894 | |
THC0290_N_0326 | 3prime | 553386:553649 - | A703 B199 C52 | 9.33 | 1.05 | new transcription segment | 755 | 1531 | |
THC0290_0463 | CDS | 561944:562513 - | A965 B307 C84 | 9.75 | -1.07 | Protein of unknown function | 770 | 1907 | |
THC0290_0467 | CDS | 564213:565787 - | A522 B180 C44 | 8.88 | -1.07 | Probable membrane associated S41A family C-terminal processing peptidase | 776 | 700 | |
THC0290_N_0337 | intra | 565788:565860 - | A310 B116 C33 | 10.43 | -2.08 | new transcription segment | 777 | 395 | |
THC0290_0468 | CDS | 565861:566289 - | A432 B164 C44 | 9.93 | -1.61 | dCMP deaminase | 778 | 556 | |
THC0290_N_0338 | intra | 566290:566469 - | A433 B164 C44 | 9.49 | -1.75 | new transcription segment | 779 | 558 | |
THC0290_0469 | CDS | 566470:567063 - | A1444 B502 C142 | 9.75 | -1.46 | Probable transmembrane protein of unknown function | 781 | 2630 | |
THC0290_N_0339 | 3prime-PT | 567081:567646 - | A1760 B546 C143 | 6.64 | 1.85 | new transcription segment | 782 | 3374 | |
THC0290_0471 | uspA | CDS | 567685:568509 - | A1042 B344 C102 | 13.99 | 1.08 | Universal stress protein UspA | 784 | 2005 |
THC0290_N_0342 | 5prime | 568510:568559 - | A1042 B344 C102 | 13.02 | 1.16 | new transcription segment | 785 | 2006 | |
THC0290_0472 | CDS | 568692:569156 + | A784 B238 C67 | 12.47 | -1.24 | Protein of unknown function | 787 | 1670 | |
THC0290_0473 | nusA | CDS | 569172:570413 + | A639 B183 C44 | 12.96 | -1.18 | Transcription elongation protein NusA | 788 | 1390 |
THC0290_tRNA_0010 | tRNA | 576546:576622 + | A762 B226 C62 | 14.90 | -1.16 | transfer RNA-Ile | 794 | 1646 | |
THC0290_tRNA_0011 | tRNA | 576781:576857 + | A762 B226 C62 | 14.94 | -1.38 | transfer RNA-Ala | 795 | 1637 | |
THC0290_0480 | CDS | 583563:584543 - | A1181 B405 C122 | 12.04 | 1.16 | Probable modification methyltransferase | 806 | 2218 | |
THC0290_0482 | CDS | 586087:587670 + | A1765 B546 C143 | 8.43 | 1.38 | Transposase IS1182 family | 809 | 3526 | |
THC0290_0485 | CDS | 589753:591324 + | A1765 B546 C143 | 8.54 | 1.22 | Transposase IS1182 family | 815 | 3527 | |
THC0290_0502 | CDS | 608390:609994 + | A1765 B546 C143 | 8.24 | 1.50 | Transposase IS1182 family | 839 | 3528 | |
THC0290_0503 | CDS | 610102:610602 - | A1765 B546 C143 | 9.71 | 1.39 | Protein of unknown function precursor | 841 | 3544 | |
THC0290_0504 | CDS | 611442:612659 + | A1765 B546 C143 | 8.43 | 1.12 | Probable transposase | 843 | 3543 | |
THC0290_0514 | CDS | 629601:630056 + | A364 B138 C39 | 8.82 | 1.16 | Protein of unknown function | 858 | 466 | |
THC0290_N_0375 | repeated_region | 634732:634818 + | A1837 B563 C145 | 4.47 | -1.10 | new transcription segment | 868 | 3930 | |
THC0290_0525 | CDS | 640567:641241 - | A1765 B546 C143 | 11.16 | 1.13 | Hypothetical protein | 876 | 3554 | |
THC0290_0526 | CDS | 642217:643776 + | A1765 B546 C143 | 8.12 | 1.76 | Transposase IS1182 family | 878 | 3529 | |
THC0290_N_0393 | repeated_region | 661643:662054 - | A1766 B546 C143 | 10.90 | -1.41 | new transcription segment | 911 | 3563 | |
THC0290_N_0396 | intra | 668261:668748 - | A1765 B546 C143 | 7.53 | 2.00 | new transcription segment | 921 | 3545 | |
THC0290_0550 | CDS | 668749:669369 - | A1765 B546 C143 | 9.61 | 1.57 | Protein of unknown function | 922 | 3546 | |
THC0290_0551 | CDS | 670143:673139 - | A1211 B415 C124 | 8.78 | 1.43 | Putative DNA or RNA helicase | 924 | 2271 | |
THC0290_N_0398 | 5prime | 673140:674020 - | A1765 B546 C143 | 9.46 | 1.31 | new transcription segment | 925 | 3547 | |
THC0290_0560 | CDS | 681664:682242 - | A1210 B415 C124 | 8.38 | 1.25 | Protein of unknown function | 939 | 2270 | |
THC0290_N_0420 | 5prime | 704419:704581 - | A497 B175 C44 | 11.04 | -1.10 | new transcription segment | 973 | 664 | |
THC0290_N_0426 | 3prime-PT | 710623:710986 - | A1037 B342 C102 | 6.49 | 2.21 | new transcription segment | 985 | 1997 | |
THC0290_N_0427 | 5prime | 710823:710903 + | A1183 B406 C122 | 6.03 | -1.05 | new transcription segment | 986 | 2220 | |
THC0290_0585 | CDS | 711836:712555 + | A1348 B467 C136 | 7.90 | -1.42 | Protein of unknown function precursor | 989 | 2501 | |
THC0290_0587 | CDS | 713131:715374 + | A1446 B502 C142 | 10.59 | -1.26 | Probable M1 family aminopeptidase precursor | 991 | 2632 | |
THC0290_0597 | deoC | CDS | 731804:732547 + | A600 B183 C44 | 10.02 | -1.08 | Deoxyribose-phosphate aldolase | 1008 | 1051 |
THC0290_0616 | murI | CDS | 751461:752240 - | A25 B13 C6 | 9.43 | -1.57 | Glutamate racemase | 1039 | 31 |
THC0290_0619 | bamA | CDS | 753852:756521 - | A545 B180 C44 | 11.70 | -1.15 | Outer membrane protein assembly complex precursor, BamA | 1043 | 779 |
THC0290_0620 | uppS | CDS | 756505:757245 - | A1353 B467 C136 | 10.60 | -1.58 | Di-trans,poly-cis-decaprenylcistransferase | 1044 | 2511 |
THC0290_0621 | CDS | 757252:757935 - | A1353 B467 C136 | 10.23 | -1.21 | Protein of unknown function precursor, putative outer membrane protein | 1045 | 2512 | |
THC0290_0636 | CDS | 770321:771202 - | A1765 B546 C143 | 8.47 | 1.07 | Probable lipoprotein precursor | 1076 | 3493 | |
THC0290_0638 | CDS | 772469:773029 + | A1710 B546 C143 | 8.06 | 1.43 | RNA polymerase ECF-type sigma factor | 1078 | 3144 | |
THC0290_0639 | CDS | 773016:773693 + | A1710 B546 C143 | 8.22 | 1.23 | Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor | 1079 | 3145 | |
THC0290_N_0466 | 5prime | 777700:777762 + | A553 B182 C44 | 8.17 | -1.29 | new transcription segment | 1083 | 799 | |
THC0290_0643 | dnaG | CDS | 777763:779748 + | A537 B180 C44 | 9.17 | -1.18 | DNA primase | 1084 | 735 |
THC0290_N_0483 | 3prime | 801868:802199 - | A780 B237 C67 | 7.72 | -1.93 | new transcription segment | 1123 | 1666 | |
THC0290_0665 | rpe | CDS | 802200:802859 - | A26 B13 C6 | 11.22 | -2.03 | Ribulose-phosphate 3-epimerase | 1124 | 32 |
THC0290_0683 | CDS | 819616:819906 + | A1674 B543 C143 | 12.10 | -1.30 | Hypothetical protein | 1150 | 3070 | |
THC0290_N_0497 | intra | 819907:819970 + | A1674 B543 C143 | 9.70 | -1.67 | new transcription segment | 1151 | 3075 | |
THC0290_0684 | sulP | CDS | 819971:821572 + | A1674 B543 C143 | 11.89 | -2.49 | Probable sulfate permease | 1152 | 3076 |
THC0290_0685 | cynT | CDS | 821595:822230 + | A1674 B543 C143 | 12.42 | -2.19 | Carbonic anhydrase | 1153 | 3077 |
THC0290_N_0498 | 3prime | 822231:822315 + | A1674 B543 C143 | 9.23 | -1.23 | new transcription segment | 1154 | 3073 | |
THC0290_0686 | CDS | 822316:823008 + | A1674 B543 C143 | 10.59 | -1.68 | Transmembrane protein of unknown function, DedA family | 1155 | 3074 | |
THC0290_N_0502 | 3prime | 829692:829841 - | A1315 B453 C133 | 4.58 | -1.38 | new transcription segment | 1166 | 2457 | |
THC0290_0703 | CDS | 840392:840925 + | A540 B180 C44 | 10.54 | -1.32 | Protein of unknown function | 1184 | 751 | |
THC0290_0708 | CDS | 845013:845807 - | A501 B175 C44 | 11.02 | -1.29 | Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase family protein | 1192 | 668 | |
THC0290_N_0519 | 3prime | 846486:846777 - | A595 B183 C44 | 11.87 | -1.29 | new transcription segment | 1196 | 956 | |
THC0290_0710 | ribH | CDS | 846778:847347 - | A600 B183 C44 | 11.64 | -1.45 | Riboflavin synthase, beta subunit | 1198 | 1103 |
THC0290_N_0521 | intra | 847348:847417 - | A454 B168 C44 | 10.45 | -1.62 | new transcription segment | 1199 | 589 | |
THC0290_0711 | CDS | 847418:848209 - | A600 B183 C44 | 12.75 | -1.96 | Protein of unknown function | 1200 | 1104 | |
THC0290_0725 | carB | CDS | 860354:863206 - | A787 B239 C67 | 10.64 | -1.23 | Carbamoyl-phosphate synthase large subunit | 1218 | 1675 |
THC0290_N_0526 | intra | 863207:863394 - | A787 B239 C67 | 10.32 | -1.76 | new transcription segment | 1219 | 1676 | |
THC0290_0726 | rpmH | CDS | 863440:863601 - | A1457 B505 C142 | 11.89 | -2.13 | 50S ribosomal protein L34 | 1221 | 2650 |
THC0290_0727 | CDS | 863756:864271 + | A846 B256 C70 | 10.52 | -1.22 | Probable transmembrane protein of unknown function | 1223 | 1766 | |
THC0290_N_0530 | intra | 866468:866905 - | A840 B254 C69 | 14.32 | 1.09 | new transcription segment | 1226 | 1751 | |
THC0290_0729 | groS | CDS | 866906:867181 - | A840 B254 C69 | 13.82 | 1.03 | 10 kDa chaperonin GroES | 1227 | 1750 |
THC0290_0738 | topA | CDS | 875152:877668 + | A544 B180 C44 | 10.52 | -1.52 | DNA topoisomerase I | 1242 | 768 |
THC0290_0740 | gldK | CDS | 878961:880355 + | A1129 B377 C110 | 13.43 | -1.00 | Gliding motility lipoprotein precursor GldK | 1244 | 2161 |
THC0290_N_0543 | 5prime | 885343:885446 + | A844 B256 C70 | 8.48 | -1.89 | new transcription segment | 1255 | 1763 | |
THC0290_0746 | CDS | 885447:887357 + | A544 B180 C44 | 10.03 | -1.60 | Probably involved in regulation of translation initiation | 1256 | 769 | |
THC0290_N_0544 | 3prime | 887134:887639 - | A132 B53 C18 | 6.34 | -1.41 | new transcription segment | 1257 | 168 | |
THC0290_N_0545 | 3prime | 887358:887776 + | A574 B183 C44 | 6.92 | -1.71 | new transcription segment | 1258 | 850 | |
THC0290_0747 | CDS | 887640:888794 - | A576 B183 C44 | 9.22 | -1.79 | Protein of unknown function | 1259 | 857 | |
THC0290_0750 | CDS | 891604:892050 - | A801 B244 C67 | 11.63 | -1.24 | Probable DnaJ-class molecular chaperone | 1266 | 1692 | |
THC0290_0762 | CDS | 908244:908816 - | A595 B183 C44 | 13.32 | -1.05 | Protein of unknown function | 1294 | 955 | |
THC0290_N_0562 | 5prime | 908817:909008 - | A893 B277 C76 | 12.75 | -1.47 | new transcription segment | 1295 | 1821 | |
THC0290_0778 | CDS | 927858:928289 - | A47 B27 C13 | 9.14 | -1.23 | Protein of unknown function | 1322 | 54 | |
THC0290_N_0574 | 5prime | 928311:928514 - | A753 B222 C61 | 8.43 | -1.05 | new transcription segment | 1323 | 1627 | |
THC0290_0779 | CDS | 928488:929126 + | A1765 B546 C143 | 8.27 | 1.05 | Probable pyrophosphohydrolase | 1324 | 3550 | |
THC0290_0793 | CDS | 943571:944119 - | A1088 B365 C107 | 9.52 | -1.39 | Probable transmembrane protein of unknown function | 1347 | 2094 | |
THC0290_0794 | fhuA | CDS | 944125:946380 - | A1088 B365 C107 | 10.82 | -1.97 | Probable TonB-dependent outer membrane ferrichrome-iron receptor precursor FhuA | 1348 | 2095 |
THC0290_0797 | pepT | CDS | 950970:952244 - | A525 B180 C44 | 11.41 | -1.07 | Tripeptide aminopeptidase | 1355 | 705 |
THC0290_N_0586 | 3prime | 952367:952448 - | A320 B120 C33 | 10.42 | 1.14 | new transcription segment | 1356 | 407 | |
THC0290_0816 | pyrG | CDS | 972612:974225 - | A800 B244 C67 | 11.75 | -1.07 | CTP synthase | 1388 | 1691 |
THC0290_0827 | CDS | 985690:987930 - | A545 B180 C44 | 12.52 | -1.03 | Probable M1 family aminopeptidase precursor | 1404 | 781 | |
THC0290_0832 | dcp2 | CDS | 990238:992370 - | A1796 B549 C143 | 8.57 | -1.09 | Peptidyl-dipeptidase precursor Dcp2 | 1410 | 3876 |
THC0290_0842 | relA | CDS | 1001835:1004054 + | A1564 B526 C143 | 12.52 | 1.80 | GTP diphosphokinase | 1428 | 2831 |
THC0290_N_0617 | 3prime | 1004055:1004461 + | A1178 B404 C122 | 8.29 | 1.91 | new transcription segment | 1429 | 2215 | |
THC0290_0843 | wbsE | CDS | 1004237:1005373 - | A1465 B506 C142 | 7.37 | -1.20 | Putative glycosyl transferase WbsE | 1430 | 2659 |
THC0290_0849 | CDS | 1009303:1009518 - | A501 B175 C44 | 6.51 | -2.15 | Hypothetical transmembrane protein | 1437 | 669 | |
THC0290_0850 | yjeB | CDS | 1009520:1009939 - | A894 B277 C76 | 6.64 | -1.50 | Protein of unknown function YjeB | 1438 | 1822 |
THC0290_0852 | nadC | CDS | 1011355:1012212 + | A525 B180 C44 | 10.40 | -1.08 | Nicotinate-nucleotide diphosphorylase (carboxylating) | 1441 | 708 |
THC0290_0880 | coaE | CDS | 1037592:1038176 + | A1765 B546 C143 | 10.05 | 1.18 | Dephospho-CoA kinase | 1480 | 3560 |
THC0290_N_0633 | intra | 1038177:1038243 + | A1765 B546 C143 | 8.55 | 1.30 | new transcription segment | 1481 | 3561 | |
THC0290_0886 | pyrD | CDS | 1043221:1044273 + | A595 B183 C44 | 10.88 | -1.17 | Dihydroorotate oxidase | 1490 | 954 |
THC0290_0889 | guaB | CDS | 1046670:1048142 + | A380 B145 C41 | 12.75 | -1.09 | IMP dehydrogenase | 1495 | 487 |
THC0290_N_0638 | intra | 1048143:1048274 + | A380 B145 C41 | 11.83 | -1.13 | new transcription segment | 1496 | 488 | |
THC0290_0890 | CDS | 1048275:1048847 + | A380 B145 C41 | 11.46 | -1.44 | Nucleoside-triphosphatase | 1497 | 486 | |
THC0290_0895 | CDS | 1054120:1055541 + | A1292 B436 C127 | 12.90 | 2.41 | Probable metallo-beta-lactamase | 1506 | 2430 | |
THC0290_0896 | CDS | 1055511:1055870 + | A1292 B436 C127 | 12.53 | 2.41 | Rhodanese-like domain protein | 1507 | 2431 | |
THC0290_0897 | CDS | 1055873:1056070 + | A1292 B436 C127 | 12.26 | 2.35 | Hypothetical transmembrane protein | 1508 | 2432 | |
THC0290_0898 | CDS | 1056073:1056375 + | A1292 B436 C127 | 11.95 | 2.68 | Thioredoxin family protein | 1509 | 2433 | |
THC0290_N_0643 | Rfp44 | indep | 1056450:1057043 + | A1751 B546 C143 | 12.79 | 1.64 | new transcription segment | 1510 | 3332 |
THC0290_0899 | CDS | 1057171:1058484 + | A1198 B413 C124 | 6.41 | 1.11 | Probable outer membrane efflux protein precursor | 1511 | 2243 | |
THC0290_0900 | CDS | 1058487:1059572 + | A1198 B413 C124 | 6.01 | 1.50 | Probable membrane fusion efflux lipoprotein precursor | 1512 | 2244 | |
THC0290_0901 | CDS | 1059740:1062964 + | A1198 B413 C124 | 5.90 | 1.09 | Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein | 1514 | 2245 | |
THC0290_N_0648 | 3prime | 1067655:1067938 - | A1485 B509 C142 | 8.46 | 1.09 | new transcription segment | 1524 | 2690 | |
THC0290_tRNA_0017 | tRNA | 1081988:1082061 + | A1769 B546 C143 | 10.84 | -1.68 | transfer RNA-Thr | 1548 | 3766 | |
THC0290_0926 | ftnA | CDS | 1087175:1087702 + | A1414 B488 C140 | 13.96 | 1.18 | Ferritin | 1555 | 2589 |
THC0290_0942 | clpB | CDS | 1110287:1112887 + | A1213 B415 C124 | 12.22 | 2.54 | ATPase with chaperone activity ATP-binding subunit | 1585 | 2277 |
THC0290_N_0671 | 3prime | 1112888:1113081 + | A1730 B546 C143 | 5.31 | 2.16 | new transcription segment | 1587 | 3196 | |
THC0290_0947 | CDS | 1120307:1120960 - | A1768 B546 C143 | 8.56 | 1.01 | Protein of unknown function precursor | 1597 | 3698 | |
THC0290_N_0685 | intra | 1130912:1130976 - | A1127 B376 C109 | 9.72 | 1.02 | new transcription segment | 1618 | 2159 | |
THC0290_0960 | CDS | 1130977:1132209 - | A1779 B546 C143 | 9.64 | 1.07 | Major facilitator superfamily (MFS) permease | 1619 | 3815 | |
THC0290_N_0696 | 5prime | 1143859:1144080 + | A1765 B546 C143 | 7.46 | 1.89 | new transcription segment | 1642 | 3557 | |
THC0290_0975 | CDS | 1144105:1145307 + | A3 B3 C2 | 9.60 | 1.04 | Cys/Met metabolism PLP-dependent enzyme | 1644 | 3 | |
THC0290_N_0709 | 5prime | 1168710:1168824 + | A838 B254 C69 | 10.69 | 1.66 | new transcription segment | 1671 | 1746 | |
THC0290_1001 | aroB | CDS | 1177958:1179025 - | A523 B180 C44 | 10.28 | -1.26 | 3-dehydroquinate synthase | 1686 | 702 |
THC0290_1032 | prmA | CDS | 1209707:1210540 - | A804 B244 C67 | 10.55 | -1.07 | 50S ribosomal protein L11 lysine methyltransferase | 1732 | 1701 |
THC0290_1037 | fjo11 | CDS | 1213924:1214790 + | A1235 B419 C125 | 7.01 | -1.84 | Probable transmembrane protein of unknown function Fjo11 | 1740 | 2309 |
THC0290_N_0737 | intra | 1216416:1216606 - | A241 B85 C26 | 10.94 | 1.29 | new transcription segment | 1745 | 314 | |
THC0290_1042 | cafA | CDS | 1218140:1219684 - | A599 B183 C44 | 13.10 | -1.24 | Ribonuclease G | 1749 | 1006 |
THC0290_N_0738 | intra | 1219685:1219937 - | A599 B183 C44 | 12.52 | -1.27 | new transcription segment | 1750 | 1007 | |
THC0290_N_0739 | 3prime | 1219938:1220068 - | A540 B180 C44 | 14.48 | -1.26 | new transcription segment | 1751 | 746 | |
THC0290_1043 | hupA | CDS | 1220069:1220365 - | A540 B180 C44 | 13.08 | -1.76 | Histone-like bacterial DNA-binding protein HU-alpha | 1752 | 744 |
THC0290_1070 | CDS | 1247959:1249245 + | A523 B180 C44 | 10.54 | -1.22 | Glycosyl transferase, group 1 family protein | 1789 | 703 | |
THC0290_N_0758 | intra | 1264319:1264459 - | A652 B183 C44 | 9.24 | 1.13 | new transcription segment | 1810 | 1423 | |
THC0290_1084 | pabB | CDS | 1264460:1265746 - | A1513 B519 C143 | 10.12 | 1.24 | Para-aminobenzoate synthase component I | 1811 | 2738 |
THC0290_N_0759 | 3prime | 1267045:1267535 - | A189 B69 C21 | 7.23 | -1.22 | new transcription segment | 1814 | 235 | |
THC0290_N_0760 | 3prime | 1267536:1267906 + | A1263 B422 C125 | 5.83 | -1.23 | new transcription segment | 1816 | 2396 | |
THC0290_N_0762 | intra | 1278815:1278864 + | A354 B133 C37 | 6.27 | 1.51 | new transcription segment | 1825 | 454 | |
THC0290_N_0765 | intra | 1281936:1282158 + | A253 B91 C27 | 10.65 | 1.04 | new transcription segment | 1832 | 330 | |
THC0290_1101 | CDS | 1286214:1287986 - | A331 B122 C33 | 9.09 | -1.28 | Putative sugar-transporting permease | 1841 | 430 | |
THC0290_1102 | CDS | 1288103:1289032 + | A1366 B469 C136 | 9.35 | -1.36 | Probable lipoprotein precursor | 1842 | 2532 | |
THC0290_N_0771 | Rfp49 | indep | 1288802:1288918 - | A1765 B546 C143 | 7.13 | 1.04 | new transcription segment | 1843 | 3531 |
THC0290_N_0774 | 5prime | 1290924:1291096 - | A1765 B546 C143 | 11.76 | 1.37 | new transcription segment | 1847 | 3541 | |
THC0290_N_0775 | 3prime | 1291385:1291947 - | A1867 B576 C149 | 9.65 | 1.07 | new transcription segment | 1849 | 3969 | |
THC0290_N_0777 | 3prime-PT | 1291430:1291730 + | A1727 B546 C143 | 8.39 | -1.12 | new transcription segment | 1850 | 3190 | |
THC0290_N_0778 | intra | 1294420:1294576 - | A1614 B535 C143 | 10.47 | 1.23 | new transcription segment | 1852 | 2912 | |
THC0290_1138 | CDS | 1330262:1330645 - | A1795 B549 C143 | 4.98 | -1.16 | Hypothetical protein | 1896 | 3857 | |
THC0290_1198 | CDS | 1383646:1384062 + | A1541 B522 C143 | 4.60 | 1.27 | Probable transmembrane protein of unknown function | 1958 | 2783 | |
THC0290_N_0798 | 5prime | 1404410:1404879 + | A434 B164 C44 | 15.82 | -1.04 | new transcription segment | 1985 | 559 | |
THC0290_tRNA_0019 | tRNA | 1406490:1406566 + | A762 B226 C62 | 14.82 | -1.03 | transfer RNA-Ile | 1987 | 1643 | |
THC0290_tRNA_0020 | tRNA | 1406725:1406801 + | A762 B226 C62 | 15.09 | -1.39 | transfer RNA-Ala | 1988 | 1636 | |
THC0290_1230 | CDS | 1425089:1425433 - | A1542 B522 C143 | 9.31 | 1.38 | Protein of unknown function | 2012 | 2784 | |
THC0290_1231 | CDS | 1425441:1426022 - | A1542 B522 C143 | 9.06 | 1.61 | Probable transmembrane protein of unknown function | 2013 | 2785 | |
THC0290_1232 | CDS | 1426026:1426304 - | A1746 B546 C143 | 8.22 | 1.98 | Protein of unknown function | 2014 | 3243 | |
THC0290_1233 | CDS | 1426680:1427324 + | A1294 B437 C127 | 10.46 | 6.54 | Probable peroxiredoxin | 2015 | 2435 | |
THC0290_1235 | CDS | 1427925:1428809 - | A688 B193 C48 | 8.02 | 1.22 | Probable transcriptional regulator, AraC family | 2017 | 1493 | |
THC0290_1236 | CDS | 1428816:1429214 - | A1793 B549 C143 | 8.88 | 1.13 | Cytochrome c family protein | 2018 | 3849 | |
THC0290_1237 | CDS | 1429217:1429477 - | A684 B192 C48 | 7.44 | 1.56 | Hypothetical transmembrane protein | 2019 | 1484 | |
THC0290_1238 | CDS | 1429483:1430496 - | A684 B192 C48 | 6.98 | 1.70 | Cytochrome c oxidase family protein | 2020 | 1485 | |
THC0290_1239 | CDS | 1430503:1432671 - | A688 B193 C48 | 7.20 | 1.91 | Cytochrome c oxidase family protein | 2021 | 1494 | |
THC0290_1240 | lolD | CDS | 1432794:1433474 - | A705 B201 C52 | 8.58 | 4.50 | Lipoprotein releasing system ATP-binding protein LolD | 2022 | 1533 |
THC0290_1241 | lolC | CDS | 1433471:1434715 - | A705 B201 C52 | 8.92 | 4.83 | Lipoprotein releasing system transmembrane protein LolC | 2023 | 1534 |
THC0290_1242 | CDS | 1434834:1435964 - | A707 B201 C52 | 10.40 | 5.61 | Probable membrane fusion efflux lipoprotein precursor | 2025 | 1536 | |
THC0290_1243 | CDS | 1435961:1436539 - | A707 B201 C52 | 9.52 | 5.75 | Probable transcriptional regulator, TetR family | 2026 | 1537 | |
THC0290_N_0809 | intra | 1437888:1437991 - | A543 B180 C44 | 8.16 | -2.24 | new transcription segment | 2031 | 765 | |
THC0290_N_0811 | intra | 1438315:1438460 - | A545 B180 C44 | 13.01 | -1.07 | new transcription segment | 2033 | 774 | |
THC0290_1246 | CDS | 1438461:1439183 - | A545 B180 C44 | 13.00 | -1.35 | Thiol:disulfide interchange lipoprotein precursor, N-terminal region | 2034 | 773 | |
THC0290_N_0815 | 3prime | 1446042:1446224 - | A1762 B546 C143 | 10.05 | 2.62 | new transcription segment | 2043 | 3426 | |
THC0290_1252 | CDS | 1446225:1446704 - | A1762 B546 C143 | 11.16 | 2.40 | Universal stress protein, UspA family | 2044 | 3425 | |
THC0290_1261 | CDS | 1460057:1460623 - | A1113 B372 C109 | 10.37 | 1.21 | Probable exonuclease | 2056 | 2142 | |
THC0290_1262 | CDS | 1460625:1462535 - | A1113 B372 C109 | 11.25 | 1.18 | Protein of unknown function | 2057 | 2143 | |
THC0290_1264 | CDS | 1464096:1465640 - | A801 B244 C67 | 10.40 | -1.10 | Putative DNA or RNA helicase | 2060 | 1696 | |
THC0290_1268 | CDS | 1468012:1468398 - | A1768 B546 C143 | 11.74 | 1.02 | Acyl-CoA hydrolase family protein | 2066 | 3703 | |
THC0290_1284 | CDS | 1484109:1485194 + | A1846 B566 C147 | 11.29 | -1.16 | Probable DNA polymerase III subunit | 2090 | 3943 | |
THC0290_N_0829 | intra | 1485195:1485337 + | A1846 B566 C147 | 10.50 | -1.24 | new transcription segment | 2091 | 3944 | |
THC0290_N_0830 | 3prime | 1485341:1485886 - | A1226 B417 C125 | 8.03 | 1.01 | new transcription segment | 2093 | 2295 | |
THC0290_1286 | CDS | 1485887:1486099 - | A1765 B546 C143 | 8.79 | 1.04 | Hypothetical protein | 2095 | 3476 | |
THC0290_1287 | ppx | CDS | 1486086:1486976 - | A1076 B360 C106 | 11.42 | 1.04 | Exopolyphosphatase | 2096 | 2048 |
THC0290_N_0832 | intra | 1486977:1487036 - | A1076 B360 C106 | 11.65 | 1.34 | new transcription segment | 2097 | 2047 | |
THC0290_N_0833 | 5prime | 1489143:1489202 - | A1709 B546 C143 | 10.01 | 1.87 | new transcription segment | 2099 | 3140 | |
THC0290_1300 | CDS | 1498732:1499442 + | A183 B67 C21 | 5.45 | -1.05 | Probable transmembrane protein of unknown function | 2117 | 229 | |
THC0290_N_0842 | intra | 1500171:1500375 - | A1022 B329 C90 | 10.25 | 1.20 | new transcription segment | 2120 | 1977 | |
THC0290_1302 | CDS | 1500376:1501800 - | A413 B156 C44 | 10.55 | 1.13 | Probable ATP-dependent exodeoxyribonuclease | 2123 | 528 | |
THC0290_1315 | CDS | 1515410:1516276 + | A1104 B371 C109 | 7.24 | 1.01 | Probable transcriptional regulator, AraC family | 2139 | 2128 | |
THC0290_1316 | CDS | 1516638:1518572 + | A687 B193 C48 | 9.89 | 2.76 | Probable myosin-crossreactive antigen | 2140 | 1489 | |
THC0290_1317 | CDS | 1518688:1519584 + | A687 B193 C48 | 9.35 | 1.94 | 3-hydroxyacyl-CoA dehydrogenase family protein | 2141 | 1491 | |
THC0290_1318 | CDS | 1519624:1521210 + | A687 B193 C48 | 9.01 | 1.33 | Probable myosin-crossreactive antigen | 2142 | 1492 | |
THC0290_1319 | CDS | 1521229:1521756 + | A687 B193 C48 | 8.45 | 1.23 | Protein of unknown function | 2143 | 1490 | |
THC0290_1320 | CDS | 1521863:1523305 - | A600 B183 C44 | 12.15 | -1.30 | Phosphate transporter family protein | 2144 | 1105 | |
THC0290_1321 | CDS | 1523330:1523983 - | A542 B180 C44 | 11.08 | -1.40 | Protein of unknown function | 2145 | 762 | |
THC0290_1337 | CDS | 1540897:1543509 + | A1762 B546 C143 | 9.49 | 1.30 | Two-component system sensor histidine kinase | 2163 | 3388 | |
THC0290_1338 | CDS | 1543512:1544648 + | A1876 B578 C149 | 9.81 | 1.52 | Protein of unknown function | 2164 | 3979 | |
THC0290_1339 | CDS | 1544648:1545673 + | A1876 B578 C149 | 9.34 | 1.17 | Probable two-component system sensor histidine kinase | 2165 | 3980 | |
THC0290_1344 | CDS | 1552913:1553296 - | A1795 B549 C143 | 6.12 | -1.18 | Transposase IS1 family | 2172 | 3856 | |
THC0290_N_0851 | intra | 1556341:1556460 + | A201 B73 C23 | 8.03 | 1.03 | new transcription segment | 2176 | 248 | |
THC0290_1359 | CDS | 1568849:1571014 + | A1501 B514 C143 | 9.66 | 1.01 | MutS family protein | 2198 | 2718 | |
THC0290_1367 | CDS | 1578901:1580292 + | A1349 B467 C136 | 11.10 | -1.23 | Protein of unknown function | 2207 | 2503 | |
THC0290_N_0867 | 3prime-PT | 1580352:1580535 + | A1676 B543 C143 | 5.83 | -1.16 | new transcription segment | 2210 | 3079 | |
THC0290_1370 | CDS | 1582125:1582283 - | A636 B183 C44 | 8.52 | -1.03 | Truncated chloromuconate cycloisomerase | 2215 | 1372 | |
THC0290_N_0871 | 3prime-PT | 1583977:1584109 - | A755 B223 C61 | 7.79 | -1.48 | new transcription segment | 2220 | 1629 | |
THC0290_N_0875 | 5prime | 1587962:1588045 - | A1460 B505 C142 | 8.91 | -1.60 | new transcription segment | 2230 | 2654 | |
THC0290_N_0878 | 5prime | 1591751:1591877 - | A1614 B535 C143 | 9.11 | 1.10 | new transcription segment | 2237 | 2909 | |
THC0290_tRNA_0023 | tRNA | 1604080:1604156 - | A762 B226 C62 | 15.08 | -1.35 | transfer RNA-Ala | 2255 | 1639 | |
THC0290_tRNA_0024 | tRNA | 1604315:1604391 - | A762 B226 C62 | 14.89 | -1.15 | transfer RNA-Ile | 2256 | 1647 | |
THC0290_N_0886 | intra | 1609029:1609186 + | A495 B174 C44 | 14.01 | -1.05 | new transcription segment | 2262 | 661 | |
THC0290_1397 | CDS | 1610957:1613875 + | A545 B180 C44 | 11.87 | -1.11 | Peptidase, M16 family | 2271 | 777 | |
THC0290_1416 | CDS | 1638359:1639153 + | A734 B211 C55 | 11.63 | 1.02 | Putative endonuclease | 2305 | 1606 | |
THC0290_N_0906 | intra | 1642443:1642537 - | A1716 B546 C143 | 9.71 | 1.06 | new transcription segment | 2308 | 3162 | |
THC0290_1419 | CDS | 1642538:1643158 - | A1561 B526 C143 | 9.85 | 1.04 | Putative translation factor | 2309 | 2824 | |
THC0290_N_0910 | 3prime-PT | 1651904:1652210 - | A1745 B546 C143 | 7.95 | 1.43 | new transcription segment | 2318 | 3240 | |
THC0290_1434 | uvrA2 | CDS | 1665356:1668187 + | A1502 B514 C143 | 10.19 | 1.65 | Excinuclease ABC, A subunit UvrA2 | 2334 | 2719 |
THC0290_N_0930 | intra | 1675609:1675691 - | A1765 B546 C143 | 9.50 | 3.47 | new transcription segment | 2354 | 3540 | |
THC0290_1444 | CDS | 1675692:1676540 - | A1762 B546 C143 | 10.37 | 3.44 | Protein of unknown function | 2355 | 3424 | |
THC0290_N_0936 | 3prime | 1680997:1681058 - | A790 B240 C67 | 8.50 | -1.66 | new transcription segment | 2364 | 1679 | |
THC0290_tRNA_0026 | tRNA | 1681166:1681243 - | A1769 B546 C143 | 11.94 | -2.41 | transfer RNA-Pro | 2366 | 3754 | |
THC0290_N_0939 | 3prime | 1683788:1684364 - | A301 B112 C32 | 6.69 | -1.05 | new transcription segment | 2374 | 386 | |
THC0290_1451 | CDS | 1684233:1684379 + | A699 B199 C52 | 11.53 | 1.87 | Hypothetical protein | 2376 | 1516 | |
THC0290_1453 | aroC | CDS | 1685827:1686894 - | A308 B115 C33 | 10.74 | -1.16 | Chorismate synthase | 2379 | 393 |
THC0290_1455 | CDS | 1687990:1688883 + | A1453 B504 C142 | 5.88 | -1.19 | Probable transcriptional regulator, LysR family | 2381 | 2645 | |
THC0290_1471 | clpA | CDS | 1709029:1711584 + | A1295 B438 C127 | 12.28 | 1.16 | ATPase with chaperone activity ATP-binding subunit | 2408 | 2437 |
THC0290_N_0957 | 3prime-PT | 1713144:1713623 - | A128 B53 C18 | 6.34 | -1.12 | new transcription segment | 2412 | 161 | |
THC0290_N_0970 | intra | 1725860:1725948 + | A1500 B514 C143 | 9.46 | 1.07 | new transcription segment | 2437 | 2717 | |
THC0290_N_0976 | 3prime | 1730076:1730154 - | A1573 B530 C143 | 8.19 | 1.52 | new transcription segment | 2449 | 2842 | |
THC0290_1494 | CDS | 1730155:1732128 - | A1761 B546 C143 | 10.49 | 1.52 | Probable ribonuclease | 2450 | 3382 | |
THC0290_N_0977 | 5prime | 1732129:1732257 - | A1768 B546 C143 | 9.98 | 1.44 | new transcription segment | 2451 | 3627 | |
THC0290_N_0979 | 3prime | 1738057:1738101 + | A93 B43 C16 | 7.83 | 1.27 | new transcription segment | 2455 | 109 | |
THC0290_1498 | rho | CDS | 1739236:1740987 - | A520 B180 C44 | 11.73 | -1.36 | Transcription termination factor Rho | 2458 | 698 |
THC0290_N_0982 | 5prime | 1740988:1741070 - | A1461 B506 C142 | 10.65 | -1.71 | new transcription segment | 2459 | 2655 | |
THC0290_N_0985 | 3prime | 1746723:1746924 - | A500 B175 C44 | 6.06 | -1.62 | new transcription segment | 2468 | 667 | |
THC0290_1505 | CDS | 1746925:1747419 - | A1456 B505 C142 | 7.14 | -1.65 | Putative phosphoesterase | 2470 | 2649 | |
THC0290_1506 | CDS | 1747485:1748612 + | A600 B183 C44 | 9.44 | -1.26 | Probable cysteine desulfurase | 2471 | 1102 | |
THC0290_1522 | CDS | 1769814:1770386 - | A852 B256 C70 | 7.90 | -1.91 | Protein of unknown function related to microcin resistance protein McbG | 2494 | 1773 | |
THC0290_N_0997 | repeated_region | 1782224:1782801 - | A568 B183 C44 | 7.43 | -1.05 | new transcription segment | 2503 | 842 | |
THC0290_1528 | CDS | 1782802:1783425 - | A600 B183 C44 | 9.91 | -1.01 | Acetyltransferase, GNAT family | 2505 | 1064 | |
THC0290_N_1004 | 3prime | 1788343:1788481 - | A1665 B542 C143 | 10.23 | 1.04 | new transcription segment | 2517 | 3045 | |
THC0290_1540 | CDS | 1795484:1795813 - | A1638 B540 C143 | 10.13 | -1.08 | Probable transcriptional regulator, PadR family | 2530 | 2972 | |
THC0290_N_1011 | intra | 1795814:1796040 - | A1638 B540 C143 | 9.38 | -1.12 | new transcription segment | 2531 | 2975 | |
THC0290_1541 | CDS | 1796041:1796505 - | A1638 B540 C143 | 10.15 | -1.16 | Probable transmembrane protein of unknown function | 2533 | 2973 | |
THC0290_N_1012 | 5prime | 1796506:1796567 - | A1638 B540 C143 | 9.60 | -1.19 | new transcription segment | 2534 | 2971 | |
THC0290_1542 | CDS | 1796696:1797148 + | A1765 B546 C143 | 6.84 | 1.86 | Protein of unknown function | 2535 | 3480 | |
THC0290_1543 | CDS | 1797232:1798140 + | A1765 B546 C143 | 10.05 | 1.13 | Probable nucleoside-diphosphate sugar epimerase | 2537 | 3481 | |
THC0290_1544 | grpE | CDS | 1798337:1798909 + | A840 B254 C69 | 13.54 | 1.34 | Chaperone protein GrpE | 2539 | 1753 |
THC0290_N_1015 | intra | 1798910:1798967 + | A831 B252 C69 | 5.41 | 2.48 | new transcription segment | 2540 | 1738 | |
THC0290_N_1028 | 5prime | 1806149:1806265 + | A894 B277 C76 | 9.02 | -1.86 | new transcription segment | 2560 | 1823 | |
THC0290_1553 | CDS | 1806266:1806697 + | A309 B116 C33 | 8.76 | -1.78 | NUDIX hydrolase | 2561 | 394 | |
THC0290_1554 | dbpA | CDS | 1806873:1808219 + | A966 B307 C84 | 9.52 | -1.35 | ATP-dependent RNA helicase DbpA | 2562 | 1909 |
THC0290_1557 | menF | CDS | 1810503:1811564 + | A1762 B546 C143 | 10.78 | 1.19 | Isochorismate synthase | 2566 | 3387 |
THC0290_N_1030 | 3prime-PT | 1811120:1811571 - | A756 B223 C61 | 6.81 | -1.80 | new transcription segment | 2567 | 1630 | |
THC0290_N_1031 | 3prime | 1811565:1811830 + | A1643 B540 C143 | 8.49 | 1.38 | new transcription segment | 2568 | 2983 | |
THC0290_tRNA_0029 | tRNA | 1813116:1813192 + | A1684 B545 C143 | 11.55 | -1.53 | transfer RNA-His | 2573 | 3088 | |
THC0290_N_1044 | 3prime | 1827108:1827653 - | A172 B63 C19 | 9.53 | -1.14 | new transcription segment | 2593 | 213 | |
THC0290_1570 | engD | CDS | 1827654:1828748 - | A776 B236 C67 | 11.49 | -1.24 | GTP-dependent nucleic acid-binding protein EngD | 2594 | 1662 |
THC0290_1572 | fdx1 | CDS | 1830238:1830588 - | A1768 B546 C143 | 11.88 | 1.53 | Ferredoxin | 2597 | 3641 |
THC0290_N_1047 | 5prime | 1830589:1830646 - | A1768 B546 C143 | 10.64 | 1.67 | new transcription segment | 2598 | 3642 | |
THC0290_1573 | CDS | 1830690:1831748 + | A1115 B373 C109 | 10.98 | 1.40 | Protein of unknown function | 2599 | 2145 | |
THC0290_1574 | serC | CDS | 1831759:1832961 + | A464 B169 C44 | 11.26 | 1.07 | Phosphoserine transaminase | 2600 | 605 |
THC0290_N_1048 | intra | 1832962:1833013 + | A476 B170 C44 | 12.40 | 1.07 | new transcription segment | 2601 | 628 | |
THC0290_N_1052 | intra | 1838232:1838361 + | A817 B247 C68 | 9.19 | -1.23 | new transcription segment | 2612 | 1720 | |
THC0290_N_1053 | 3prime | 1840491:1841109 - | A1570 B528 C143 | 8.53 | 1.27 | new transcription segment | 2615 | 2838 | |
THC0290_1586 | CDS | 1842055:1842597 + | A1765 B546 C143 | 6.72 | 1.04 | RNA polymerase ECF-type sigma factor | 2618 | 3498 | |
THC0290_1587 | CDS | 1842628:1843008 + | A1765 B546 C143 | 7.60 | 1.33 | Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor | 2619 | 3499 | |
THC0290_1588 | CDS | 1843019:1843477 + | A1765 B546 C143 | 8.21 | 1.24 | Protein of unknown function precursor, putative sensor of anti-sigma and ECF sigma factor | 2620 | 3500 | |
THC0290_1589 | gene | 1843630:1844010 - | A1765 B546 C143 | 7.37 | 1.09 | Truncated protein, C-terminal region (fragment) | 2622 | 3487 | |
THC0290_1590 | gene | 1844029:1844682 - | A1765 B546 C143 | 7.96 | 1.46 | Truncated protein, N-terminal region (fragment) | 2624 | 3488 | |
THC0290_N_1058 | intra | 1852953:1853067 + | A1762 B546 C143 | 8.90 | 1.25 | new transcription segment | 2632 | 3406 | |
THC0290_N_1059 | Rfp68 | indep | 1853069:1853412 + | A1762 B546 C143 | 9.58 | 1.03 | new transcription segment | 2633 | 3407 |
THC0290_1600 | (lptF/lptG) | CDS | 1858321:1859406 - | A575 B183 C44 | 9.72 | -1.23 | Probable lipopolysaccharide export system permease protein, lptF/lptG family | 2643 | 852 |
THC0290_1601 | tgt | CDS | 1859480:1860610 - | A575 B183 C44 | 11.60 | -1.43 | Queuine tRNA-ribosyltransferase | 2645 | 853 |
THC0290_1609 | CDS | 1868465:1868836 - | A974 B307 C84 | 12.40 | 1.04 | Protein of unknown function | 2657 | 1923 | |
THC0290_1623 | CDS | 1885425:1885799 - | A1747 B546 C143 | 6.13 | -1.05 | Protein of unknown function | 2685 | 3254 | |
THC0290_N_1084 | 5prime | 1885800:1885859 - | A1730 B546 C143 | 6.11 | -1.70 | new transcription segment | 2686 | 3194 | |
THC0290_N_1087 | intra | 1888625:1888779 + | A1207 B415 C124 | 11.46 | 1.71 | new transcription segment | 2693 | 2265 | |
THC0290_N_1088 | 3prime | 1889021:1889095 + | A1207 B415 C124 | 9.40 | 1.10 | new transcription segment | 2695 | 2263 | |
THC0290_N_1095 | 3prime | 1896834:1897089 + | A1832 B562 C145 | 6.39 | -1.21 | new transcription segment | 2709 | 3925 | |
THC0290_1637 | fsr | CDS | 1898436:1899650 - | A573 B183 C44 | 7.89 | -1.53 | Major facilitator superfamily (MFS) permease. Fosmidomycin resistance protein | 2711 | 849 |
THC0290_N_1097 | intra | 1901071:1901159 - | A1714 B546 C143 | 11.09 | 1.70 | new transcription segment | 2715 | 3156 | |
THC0290_1640 | CDS | 1901160:1902068 - | A1714 B546 C143 | 10.76 | 1.95 | Probable transmembrane protein of unknown function | 2716 | 3155 | |
THC0290_1656 | CDS | 1919553:1920407 - | A961 B305 C84 | 7.93 | -1.22 | Probable outer membrane protein, OmpA family | 2744 | 1902 | |
THC0290_N_1109 | 3prime-PT | 1920516:1920593 - | A794 B241 C67 | 6.29 | -2.57 | new transcription segment | 2745 | 1683 | |
THC0290_1657 | glnA | CDS | 1920647:1922836 - | A961 B305 C84 | 11.66 | -1.48 | Glutamate--ammonia ligase | 2746 | 1903 |
THC0290_1664 | pyrF | CDS | 1928985:1929812 - | A897 B279 C76 | 11.06 | -1.12 | Orotidine-5'-phosphate decarboxylase | 2759 | 1826 |
THC0290_N_1125 | Rfp73 | indep | 1939566:1939699 + | A1768 B546 C143 | 5.73 | 1.40 | new transcription segment | 2771 | 3684 |
THC0290_N_1127 | 3prime | 1944731:1944905 - | A1666 B542 C143 | 8.40 | 1.33 | new transcription segment | 2776 | 3049 | |
THC0290_N_1135 | 3prime | 1955249:1955613 - | A134 B53 C18 | 7.27 | -1.11 | new transcription segment | 2791 | 171 | |
THC0290_1683 | CDS | 1955614:1957143 - | A607 B183 C44 | 11.26 | -1.02 | Probable monooxygenase | 2793 | 1259 | |
THC0290_1686 | CDS | 1958217:1958849 + | A1720 B546 C143 | 12.58 | -1.14 | Nitroreductase | 2797 | 3170 | |
THC0290_N_1150 | intra | 1977128:1977205 - | A1768 B546 C143 | 10.75 | 1.10 | new transcription segment | 2830 | 3702 | |
THC0290_N_1153 | intra | 1982951:1983088 + | A1520 B521 C143 | 8.06 | 1.05 | new transcription segment | 2839 | 2753 | |
THC0290_1712 | CDS | 1988044:1989246 + | A499 B175 C44 | 9.86 | -1.07 | Putative monofunctional lysine-ketoglutarate reductase | 2844 | 666 | |
THC0290_1717 | typA | CDS | 1993758:1995554 - | A801 B244 C67 | 12.85 | -1.11 | GTP-binding protein TypA | 2855 | 1694 |
THC0290_N_1161 | Rfp78 | indep | 1995370:1995588 + | A1768 B546 C143 | 6.65 | 1.59 | new transcription segment | 2856 | 3686 |
THC0290_tRNA_0031 | tRNA | 1999846:1999922 - | A762 B226 C62 | 14.94 | -1.41 | transfer RNA-Ala | 2859 | 1640 | |
THC0290_tRNA_0032 | tRNA | 2000081:2000157 - | A762 B226 C62 | 14.83 | -1.07 | transfer RNA-Ile | 2860 | 1644 | |
THC0290_tRNA_0033 | tRNA | 2003330:2003404 - | A1769 B546 C143 | 10.48 | -2.40 | transfer RNA-Glu | 2865 | 3759 | |
THC0290_tRNA_0034 | tRNA | 2003436:2003507 - | A1769 B546 C143 | 10.09 | -2.13 | transfer RNA-Glu | 2866 | 3760 | |
THC0290_N_1172 | 5prime | 2010199:2010299 + | A1699 B546 C143 | 6.23 | -1.44 | new transcription segment | 2877 | 3111 | |
THC0290_1724 | CDS | 2010300:2011496 + | A1471 B507 C142 | 7.03 | -1.05 | Two-component system sensor histidine kinase | 2878 | 2665 | |
THC0290_1725 | CDS | 2011497:2012180 + | A1471 B507 C142 | 7.17 | -1.12 | Two-component system response regulatory protein | 2879 | 2666 | |
THC0290_1736 | CDS | 2023096:2024181 + | A1765 B546 C143 | 7.57 | 1.21 | Probable penicillin-binding protein precursor | 2895 | 3495 | |
THC0290_N_1178 | 3prime | 2024212:2024277 - | A1714 B546 C143 | 7.88 | 1.37 | new transcription segment | 2896 | 3153 | |
THC0290_N_1182 | 3prime | 2035079:2035241 - | A1276 B426 C125 | 7.03 | -1.35 | new transcription segment | 2910 | 2414 | |
THC0290_1761 | CDS | 2045877:2046872 - | A545 B180 C44 | 11.72 | -1.38 | Probable lipoprotein precursor | 2934 | 782 | |
THC0290_tRNA_0035 | tRNA | 2049056:2049131 + | A1769 B546 C143 | 9.48 | -2.36 | transfer RNA-Lys | 2942 | 3775 | |
THC0290_tRNA_0036 | tRNA | 2049155:2049230 + | A1769 B546 C143 | 9.59 | -2.43 | transfer RNA-Lys | 2943 | 3776 | |
THC0290_tRNA_0037 | tRNA | 2049271:2049353 + | A1769 B546 C143 | 7.95 | -1.78 | transfer RNA-Leu | 2944 | 3756 | |
THC0290_N_1198 | 3prime | 2057167:2057224 - | A360 B137 C39 | 4.53 | 1.09 | new transcription segment | 2956 | 461 | |
THC0290_1780 | cobU | CDS | 2063724:2064236 - | A606 B183 C44 | 9.40 | -1.19 | Bifunctional protein cobU : adenosylcobinamide kinase and adenosylcobinamide-phosphate guanylyltransferase | 2966 | 1257 |
THC0290_N_1202 | 3prime | 2074019:2074225 - | A704 B200 C52 | 9.26 | 2.57 | new transcription segment | 2977 | 1532 | |
THC0290_1790 | deoD | CDS | 2074226:2075038 - | A706 B201 C52 | 10.22 | 2.94 | Purine-nucleoside phosphorylase | 2978 | 1535 |
THC0290_N_1208 | 3prime | 2080646:2081110 - | A1088 B365 C107 | 8.53 | -1.26 | new transcription segment | 2989 | 2092 | |
THC0290_1796 | CDS | 2081111:2082283 - | A1088 B365 C107 | 10.20 | -1.32 | Probable lipoprotein precursor | 2990 | 2106 | |
THC0290_1801 | CDS | 2085799:2087151 - | A1088 B365 C107 | 7.36 | -1.40 | Protein of unknown function | 2996 | 2102 | |
THC0290_1802 | CDS | 2087189:2087410 - | A1088 B365 C107 | 8.28 | -1.49 | Hypothetical protein | 2997 | 2100 | |
THC0290_1803 | apbE | CDS | 2087394:2088356 - | A1088 B365 C107 | 7.40 | -1.90 | Membrane-associated protein involved in thiamine biosynthesis | 2998 | 2101 |
THC0290_1804 | CDS | 2088365:2088802 - | A1088 B365 C107 | 6.84 | -2.08 | Thioredoxin family protein | 2999 | 2081 | |
THC0290_1805 | CDS | 2088958:2090196 + | A1088 B365 C107 | 11.28 | -1.86 | Protein of unknown function | 3000 | 2097 | |
THC0290_1806 | irpA | CDS | 2090250:2091365 + | A1088 B365 C107 | 12.12 | -1.02 | Iron-regulated protein A precursor | 3002 | 2098 |
THC0290_1807 | CDS | 2091368:2092735 + | A483 B172 C44 | 10.10 | -1.32 | Probable vitamin K-dependent gamma-carboxylase | 3003 | 636 | |
THC0290_1814 | CDS | 2097857:2099929 - | A1088 B365 C107 | 7.53 | -2.04 | Probable TonB-dependent outer membrane receptor precursor | 3014 | 2082 | |
THC0290_1815 | CDS | 2100027:2100941 + | A1088 B365 C107 | 10.13 | -1.30 | Protein of unknown function precursor | 3015 | 2080 | |
THC0290_1818 | CDS | 2103430:2107788 + | A1762 B546 C143 | 8.01 | 3.31 | Protein of unknown function precursor, putative adhesin | 3021 | 3404 | |
THC0290_1819 | CDS | 2107930:2110392 + | A777 B236 C67 | 11.29 | -1.59 | Probable TonB-dependent outer membrane receptor precursor | 3022 | 1663 | |
THC0290_1825 | CDS | 2115307:2115978 - | A1763 B546 C143 | 10.97 | 1.14 | Protein of unknown function | 3029 | 3438 | |
THC0290_tRNA_0038 | tRNA | 2134524:2134600 - | A762 B226 C62 | 15.02 | -1.48 | transfer RNA-Ala | 3046 | 1641 | |
THC0290_tRNA_0039 | tRNA | 2134759:2134835 - | A762 B226 C62 | 14.95 | -1.05 | transfer RNA-Ile | 3047 | 1645 | |
THC0290_1841 | phoH | CDS | 2141811:2142761 - | A1044 B344 C102 | 12.67 | 1.33 | Phosphate starvation-inducible protein PhoH | 3061 | 2009 |
THC0290_1864 | CDS | 2163366:2164622 - | A1070 B357 C105 | 9.91 | -1.40 | Major facilitator superfamily (MFS) permease | 3102 | 2041 | |
THC0290_1866 | CDS | 2166073:2166717 - | A482 B172 C44 | 12.70 | -1.24 | Putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer | 3106 | 635 | |
THC0290_1869 | uvrA1 | CDS | 2168946:2171735 + | A1765 B546 C143 | 10.44 | 1.69 | Excinuclease ABC, A subunit UvrA1 | 3111 | 3558 |
THC0290_1874 | pepX2 | CDS | 2177914:2180046 + | A525 B180 C44 | 10.83 | -1.78 | Xaa-Pro dipeptidyl-peptidase precursor | 3122 | 706 |
THC0290_tRNA_0040 | tRNA | 2181579:2181656 + | A1769 B546 C143 | 11.81 | -2.43 | transfer RNA-Pro | 3125 | 3755 | |
THC0290_1894 | CDS | 2200955:2202130 - | A1113 B372 C109 | 11.92 | 1.08 | Probable sugar phosphate nucleotydyl transferase | 3155 | 2141 | |
THC0290_1896 | CDS | 2202863:2203393 + | A1762 B546 C143 | 11.27 | 1.02 | Probable transmembrane protein of unknown function | 3159 | 3399 | |
THC0290_N_1275 | intra | 2204353:2204449 + | A1497 B513 C143 | 10.54 | 1.01 | new transcription segment | 3161 | 2714 | |
THC0290_1914 | ccoI | CDS | 2223560:2225938 + | A701 B199 C52 | 10.34 | 4.94 | Probable cytochrome cbb3 oxidase maturation protein CcoI | 3191 | 1528 |
THC0290_N_1290 | intra | 2225939:2225999 + | A700 B199 C52 | 11.17 | 5.44 | new transcription segment | 3192 | 1525 | |
THC0290_1915 | ccoS | CDS | 2226015:2226212 + | A700 B199 C52 | 12.41 | 4.76 | Probable cytochrome cbb3 oxidase maturation protein CcoS | 3193 | 1526 |
THC0290_1916 | CDS | 2226196:2227179 + | A700 B199 C52 | 12.47 | 4.80 | Probable acyl-[acyl-carrier-protein] desaturase | 3194 | 1527 | |
THC0290_N_1291 | intra | 2227180:2227238 + | A700 B199 C52 | 12.70 | 5.10 | new transcription segment | 3195 | 1524 | |
THC0290_1917 | ccoN/ccoO | CDS | 2227239:2229419 + | A700 B199 C52 | 12.56 | 4.58 | Cytochrome c oxidase, cbb3-type, subunit I and II | 3196 | 1521 |
THC0290_N_1292 | intra | 2229420:2229495 + | A700 B199 C52 | 12.64 | 4.56 | new transcription segment | 3197 | 1520 | |
THC0290_1918 | ccoQ | CDS | 2229496:2229687 + | A700 B199 C52 | 12.10 | 4.86 | Cytochrome c oxidase, cbb3-type, subunit IV | 3198 | 1519 |
THC0290_1919 | ccoP | CDS | 2229694:2230629 + | A700 B199 C52 | 12.86 | 4.13 | Cytochrome c oxidase, cbb3-type, subunit III | 3199 | 1522 |
THC0290_1920 | ccoG | CDS | 2230634:2232052 + | A700 B199 C52 | 12.24 | 4.19 | Probable cytochrome cbb3 oxidase maturation protein CcoG | 3200 | 1518 |
THC0290_1921 | ccoH | CDS | 2232073:2232522 + | A698 B198 C52 | 11.50 | 4.39 | Probable cytochrome cbb3 oxidase maturation protein CcoH | 3201 | 1514 |
THC0290_N_1293 | intra | 2232523:2232613 + | A698 B198 C52 | 11.68 | 4.11 | new transcription segment | 3202 | 1513 | |
THC0290_1922 | CDS | 2232614:2233318 + | A698 B198 C52 | 11.30 | 4.44 | Probable transmembrane protein of unknown function | 3203 | 1515 | |
THC0290_1923 | CDS | 2233345:2233575 + | A698 B198 C52 | 10.82 | 3.48 | Protein of unknown function | 3204 | 1512 | |
THC0290_1924 | hemN | CDS | 2233612:2234976 - | A701 B199 C52 | 10.17 | 3.05 | Oxygen-independent coproporphyrinogen III oxidase HemN | 3205 | 1529 |
THC0290_N_1298 | 3prime | 2240124:2240177 - | A297 B110 C31 | 5.87 | -1.23 | new transcription segment | 3211 | 382 | |
THC0290_1928 | surA | CDS | 2240178:2241557 - | A820 B248 C68 | 11.85 | -1.25 | Peptidyl-prolyl cis-trans isomerase precursor | 3212 | 1723 |
THC0290_1929 | CDS | 2241561:2243537 - | A820 B248 C68 | 11.28 | -1.39 | Probable peptidyl-prolyl cis-trans isomerase precursor | 3213 | 1724 | |
THC0290_N_1301 | intra | 2254649:2254699 + | A40 B24 C12 | 5.55 | 1.29 | new transcription segment | 3220 | 47 | |
THC0290_1943 | secE | CDS | 2266951:2267148 - | A540 B180 C44 | 13.75 | -1.14 | Preprotein translocase SecE subunit | 3236 | 747 |
THC0290_tRNA_0041 | tRNA | 2267163:2267236 - | A1769 B546 C143 | 9.93 | -1.49 | transfer RNA-Trp | 3237 | 3758 | |
THC0290_N_1310 | 3prime | 2267237:2267297 - | A954 B302 C82 | 9.34 | -1.03 | new transcription segment | 3238 | 1893 | |
THC0290_tRNA_0042 | tRNA | 2268541:2268615 - | A1462 B506 C142 | 10.89 | -2.81 | transfer RNA-Thr | 3241 | 2656 | |
THC0290_N_1312 | intra | 2268616:2268698 - | A791 B240 C67 | 9.74 | -2.55 | new transcription segment | 3242 | 1680 | |
THC0290_tRNA_0043 | tRNA | 2268699:2268782 - | A1769 B546 C143 | 10.52 | -1.52 | transfer RNA-Tyr | 3243 | 3764 | |
THC0290_N_1313 | intra | 2268783:2268920 - | A792 B240 C67 | 9.92 | -1.96 | new transcription segment | 3244 | 1681 | |
THC0290_tRNA_0044 | tRNA | 2268921:2268997 - | A1769 B546 C143 | 10.92 | -1.75 | transfer RNA-Thr | 3245 | 3767 | |
THC0290_1945 | CDS | 2269088:2269390 - | A1762 B546 C143 | 13.85 | 1.30 | Protein of unknown function | 3247 | 3402 | |
THC0290_1946 | xerC | CDS | 2269424:2270320 - | A1043 B344 C102 | 11.27 | 1.08 | Tyrosine recombinase XerC | 3248 | 2007 |
THC0290_1949 | CDS | 2272035:2272910 - | A1765 B546 C143 | 9.72 | 1.30 | Probable transmembrane protein of unknown function | 3254 | 3555 | |
THC0290_N_1320 | intra | 2274529:2274766 - | A1150 B392 C119 | 5.47 | -1.27 | new transcription segment | 3259 | 2183 | |
THC0290_1957 | rnhB | CDS | 2284496:2285155 + | A1782 B547 C143 | 8.09 | -1.47 | Ribonuclease HII | 3268 | 3831 |
THC0290_N_1325 | 3prime | 2285156:2285362 + | A187 B68 C21 | 6.96 | -2.13 | new transcription segment | 3271 | 233 | |
THC0290_1963 | acdS | CDS | 2291236:2292138 - | A1765 B546 C143 | 11.17 | 1.02 | 1-aminocyclopropane-1-carboxylate deaminase | 3280 | 3530 |
THC0290_N_1330 | 5prime | 2293180:2293246 + | A903 B280 C77 | 10.81 | -1.46 | new transcription segment | 3283 | 1833 | |
THC0290_1965 | dnaA | CDS | 2293247:2294683 + | A428 B164 C44 | 12.30 | -1.15 | Chromosomal replication initiator protein DnaA | 3284 | 551 |
THC0290_1966 | CDS | 2294705:2295145 + | A527 B180 C44 | 11.83 | -1.22 | Low molecular weight phosphotyrosine protein phosphatase | 3285 | 713 | |
THC0290_1967 | CDS | 2295152:2295868 + | A527 B180 C44 | 10.94 | -1.14 | Probable methyltransferase | 3286 | 714 | |
THC0290_N_1333 | 3prime | 2295869:2296343 + | A758 B224 C62 | 8.32 | -1.42 | new transcription segment | 3289 | 1632 | |
THC0290_1971 | CDS | 2298569:2299102 - | A1564 B526 C143 | 9.61 | 1.87 | Probable ribosomal-protein-amino-adic N-acetyltransferase | 3293 | 2830 | |
THC0290_1972 | dapF | CDS | 2299113:2299883 - | A1564 B526 C143 | 11.82 | 1.94 | Diaminopimelate epimerase | 3294 | 2832 |
THC0290_N_1335 | 5prime | 2299884:2300001 - | A1707 B546 C143 | 10.95 | 2.18 | new transcription segment | 3295 | 3129 | |
THC0290_1978 | CDS | 2307042:2307821 + | A522 B180 C44 | 12.66 | -1.38 | Protein of unknown function | 3306 | 701 | |
THC0290_N_1346 | 3prime | 2315675:2316164 - | A1101 B370 C109 | 10.16 | 1.12 | new transcription segment | 3325 | 2122 | |
THC0290_N_1354 | 5prime | 2355862:2355968 - | A1495 B512 C143 | 6.32 | -1.43 | new transcription segment | 3370 | 2711 | |
THC0290_2030 | CDS | 2357857:2358465 + | A1088 B365 C107 | 6.56 | -1.50 | Hypothetical lipoprotein precursor | 3373 | 2107 | |
THC0290_2031 | CDS | 2358462:2359160 + | A1088 B365 C107 | 6.87 | -1.27 | Hypothetical protein precursor | 3374 | 2099 | |
THC0290_N_1356 | 3prime | 2359161:2359474 + | A1087 B365 C107 | 5.73 | -1.68 | new transcription segment | 3375 | 2079 | |
THC0290_N_1372 | 3prime | 2396621:2397103 - | A598 B183 C44 | 11.23 | -1.22 | new transcription segment | 3423 | 990 | |
THC0290_2066 | carA | CDS | 2398444:2399553 - | A605 B183 C44 | 12.63 | -1.34 | Carbamoyl-phosphate synthase small subunit | 3427 | 1233 |
THC0290_N_1387 | 3prime-PT | 2424777:2424846 + | A295 B109 C31 | 5.00 | -1.21 | new transcription segment | 3475 | 380 | |
THC0290_2103 | CDS | 2424831:2425625 - | A1211 B415 C124 | 10.79 | 1.87 | Probable transmembrane protein of unknown function | 3477 | 2272 | |
THC0290_N_1412 | 5prime | 2467518:2467597 - | A429 B164 C44 | 12.77 | -1.03 | new transcription segment | 3544 | 552 | |
THC0290_tRNA_0045 | tRNA | 2481345:2481421 - | A762 B226 C62 | 14.92 | -1.44 | transfer RNA-Ala | 3557 | 1638 | |
THC0290_2150 | CDS | 2484280:2485533 - | A521 B180 C44 | 9.21 | -1.39 | Probable ABC-type transport system, permease component | 3562 | 699 | |
THC0290_N_1421 | 3prime | 2488233:2488361 + | A1578 B530 C143 | 5.12 | 1.28 | new transcription segment | 3569 | 2849 | |
THC0290_2165 | exbB | CDS | 2500639:2501457 - | A398 B152 C42 | 13.56 | -1.19 | Biopolymer transport ExbB protein | 3586 | 508 |
THC0290_2203 | CDS | 2551514:2552260 - | A1130 B378 C110 | 8.14 | -1.01 | Probable acyltransferase | 3648 | 2162 | |
THC0290_2248 | CDS | 2600132:2601265 + | A600 B183 C44 | 10.86 | -1.08 | Protein of unknown function | 3707 | 1062 | |
THC0290_2266 | pepX1 | CDS | 2621923:2624088 - | A607 B183 C44 | 11.39 | -1.54 | Xaa-Pro dipeptidyl-peptidase precursor | 3739 | 1260 |
THC0290_N_1484 | intra | 2624481:2624662 + | A1768 B546 C143 | 10.73 | 1.11 | new transcription segment | 3741 | 3632 | |
THC0290_2271 | CDS | 2627871:2628104 - | A1575 B530 C143 | 7.76 | 1.37 | Protein of unknown function (fragment) | 3746 | 2845 | |
THC0290_2281 | CDS | 2637645:2638259 + | A1294 B437 C127 | 10.58 | 5.19 | Protein of unknown function | 3762 | 2436 | |
THC0290_N_1492 | 3prime | 2637955:2638255 - | A120 B50 C18 | 6.77 | -1.95 | new transcription segment | 3763 | 153 | |
THC0290_N_1493 | 3prime | 2638260:2638680 + | A1293 B437 C127 | 8.29 | 4.92 | new transcription segment | 3765 | 2434 | |
THC0290_2290 | CDS | 2646450:2647133 + | A1600 B535 C143 | 12.47 | 1.35 | Probable M48 family membrane-associated zinc metalloprotease precursor | 3777 | 2878 | |
THC0290_N_1497 | 3prime | 2646734:2647346 - | A1765 B546 C143 | 5.75 | -1.05 | new transcription segment | 3778 | 3506 | |
THC0290_N_1498 | 3prime | 2647134:2647823 + | A1296 B439 C127 | 10.42 | 1.28 | new transcription segment | 3779 | 2438 | |
THC0290_2296 | CDS | 2652224:2654422 - | A730 B209 C54 | 9.37 | 1.03 | Probable TonB-dependent outer membrane receptor precursor | 3788 | 1596 | |
THC0290_N_1504 | intra | 2655471:2655533 - | A528 B180 C44 | 10.04 | -1.03 | new transcription segment | 3793 | 716 | |
THC0290_2298 | CDS | 2655534:2656004 - | A528 B180 C44 | 10.79 | -1.03 | Probable transcriptional regulator, AsnC family | 3794 | 715 | |
THC0290_2299 | CDS | 2656154:2657524 - | A600 B183 C44 | 11.68 | -1.09 | Probable saccharopine dehydrogenase | 3796 | 1108 | |
THC0290_N_1511 | intra | 2663411:2663527 - | A600 B183 C44 | 12.54 | -1.28 | new transcription segment | 3807 | 1058 | |
THC0290_2307 | CDS | 2663774:2664337 - | A885 B275 C75 | 12.89 | -1.35 | Protein of unknown function | 3809 | 1811 | |
THC0290_N_1518 | 3prime | 2672322:2672406 - | A620 B183 C44 | 9.06 | 1.17 | new transcription segment | 3825 | 1329 | |
THC0290_2323 | CDS | 2679247:2681118 + | A609 B183 C44 | 12.03 | -1.20 | Probable M1 family aminopeptidase precursor | 3835 | 1278 | |
THC0290_N_1523 | 3prime | 2681617:2681861 - | A1816 B557 C145 | 7.44 | -1.72 | new transcription segment | 3837 | 3907 | |
THC0290_2325 | CDS | 2681862:2682191 - | A1596 B534 C143 | 8.40 | -1.68 | Probable ferredoxin | 3838 | 2871 | |
THC0290_N_1526 | 3prime | 2682363:2682437 - | A680 B190 C47 | 11.39 | 1.27 | new transcription segment | 3842 | 1471 | |
THC0290_2326 | CDS | 2682438:2685902 - | A681 B190 C47 | 13.25 | 1.16 | Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein | 3843 | 1473 | |
THC0290_2327 | CDS | 2685933:2687075 - | A681 B190 C47 | 13.73 | 1.17 | Probable membrane fusion efflux lipoprotein precursor | 3844 | 1474 | |
THC0290_2328 | CDS | 2687094:2688437 - | A681 B190 C47 | 13.37 | 1.49 | Probable outer membrane efflux protein precursor | 3845 | 1472 | |
THC0290_2329 | CDS | 2688448:2689041 - | A679 B190 C47 | 12.44 | 1.51 | Probable transcriptional regulator, TetR family | 3846 | 1470 | |
THC0290_2332 | CDS | 2690655:2691227 - | A1762 B546 C143 | 10.57 | 1.05 | Hypothetical protein precursor | 3852 | 3427 | |
THC0290_2352 | CDS | 2721816:2722499 - | A1107 B371 C109 | 8.57 | 1.15 | Putative amidophosphoribosyltransferase | 3888 | 2133 | |
THC0290_2358 | CDS | 2728448:2729662 - | A545 B180 C44 | 10.90 | -1.36 | Protein of unknown function precursor, putative outer membrane protein | 3896 | 780 | |
THC0290_tRNA_0049 | tRNA | 2730483:2730558 + | A1769 B546 C143 | 7.23 | -2.73 | transfer RNA-Phe | 3898 | 3757 | |
THC0290_N_1550 | 3prime | 2730564:2730708 - | A1762 B546 C143 | 7.51 | 2.07 | new transcription segment | 3899 | 3429 | |
THC0290_2361 | smf | CDS | 2731266:2732366 - | A526 B180 C44 | 7.62 | -1.05 | Protein Smf of unknown function | 3902 | 710 |
THC0290_N_1560 | 5prime | 2742298:2742400 - | A1768 B546 C143 | 10.64 | 1.04 | new transcription segment | 3921 | 3614 | |
THC0290_2385 | CDS | 2756669:2758039 + | A1795 B549 C143 | 8.04 | 1.11 | RCC1 (Regulator of Chromosome Condensation) repeat domain protein precursor | 3947 | 3862 | |
THC0290_N_1572 | 3prime | 2758040:2758319 + | A1795 B549 C143 | 7.02 | 1.42 | new transcription segment | 3949 | 3863 |