Differential expression: Peroxide stress [HP.vs.Ctrl]
Differentially expressed genes after 10 min exposure to 100 µM hydrogen peroxide relative to unstressed condition (OD600nm=0.8, TYES at 18°C 200 rpm).
List of differentially expressed genomic elements (CDS and newly identified RNA elements).Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.
Reference samples: CS1_a, CS1_b
Test samples: HP_a, HP_b
Locus Tag | Name (v2) | Feature type | Location | Clusters | Base Expr. | Delta Expr. | Annotation | Chromosome order | Clusters order |
---|---|---|---|---|---|---|---|---|---|
THC0290_N_0008 | 3prime-PT | 8228:8499 + | A1768 B546 C143 | 6.70 | 2.08 | new transcription segment | 15 | 3687 | |
THC0290_0015 | CDS | 18295:18858 + | A600 B183 C44 | 12.05 | -1.44 | Probable outer membrane lipoprotein precursor, OmpH family | 27 | 1054 | |
THC0290_N_0020 | 5prime | 25333:25398 + | A1254 B420 C125 | 4.80 | -1.30 | new transcription segment | 39 | 2378 | |
THC0290_N_0023 | 3prime | 32460:32570 + | A1747 B546 C143 | 6.22 | 1.28 | new transcription segment | 46 | 3264 | |
THC0290_0029 | elaA | CDS | 47729:48178 + | A1768 B546 C143 | 9.50 | 1.10 | ElaA protein | 55 | 3677 |
THC0290_N_0028 | 3prime | 48179:48337 + | A1817 B557 C145 | 8.10 | 1.15 | new transcription segment | 57 | 3908 | |
THC0290_N_0029 | Rfp3 | indep | 49141:49425 + | A1768 B546 C143 | 8.51 | 1.06 | new transcription segment | 58 | 3650 |
THC0290_N_0030 | 5prime | 49569:49619 + | A1713 B546 C143 | 10.55 | 1.71 | new transcription segment | 59 | 3152 | |
THC0290_0031 | yceA | CDS | 49620:50978 + | A1713 B546 C143 | 11.68 | 2.04 | Protein of unknown function YceA | 60 | 3151 |
THC0290_N_0031 | 5prime | 51080:51148 + | A1543 B522 C143 | 8.40 | 1.57 | new transcription segment | 61 | 2786 | |
THC0290_N_0047 | 3prime | 81395:81474 - | A941 B297 C82 | 8.33 | 1.46 | new transcription segment | 106 | 1880 | |
THC0290_N_0067 | intra | 110638:110698 - | A643 B183 C44 | 6.71 | -1.14 | new transcription segment | 152 | 1398 | |
THC0290_0087 | CDS | 112762:113097 - | A1654 B542 C143 | 8.42 | 1.12 | Probable single-stranded DNA-binding protein | 154 | 3023 | |
THC0290_N_0076 | 5prime | 131417:131569 + | A205 B75 C24 | 12.30 | -1.41 | new transcription segment | 177 | 256 | |
THC0290_0102 | CDS | 131570:132853 + | A204 B75 C24 | 13.28 | -1.48 | Protein of unknown function | 178 | 252 | |
THC0290_N_0077 | intra | 132854:133118 + | A205 B75 C24 | 12.55 | -1.21 | new transcription segment | 179 | 257 | |
THC0290_0103 | CDS | 133119:133640 + | A204 B75 C24 | 13.36 | -1.28 | Protein of unknown function precursor | 180 | 254 | |
THC0290_0104 | CDS | 133660:134139 + | A204 B75 C24 | 13.79 | -1.13 | Probable lipoprotein precursor | 181 | 255 | |
THC0290_0116 | panC | CDS | 145223:146071 - | A605 B183 C44 | 10.84 | -1.40 | Pantoate--beta-alanine ligase | 195 | 1248 |
THC0290_N_0086 | intra | 156931:157009 + | A639 B183 C44 | 11.40 | -1.16 | new transcription segment | 205 | 1387 | |
THC0290_0131 | CDS | 162019:162429 - | A598 B183 C44 | 9.63 | -1.30 | Protein of unknown function | 219 | 989 | |
THC0290_N_0095 | repeated_region | 164214:164791 - | A676 B189 C46 | 8.71 | 1.37 | new transcription segment | 226 | 1458 | |
THC0290_N_0102 | intra | 176973:177041 - | A545 B180 C44 | 12.99 | -1.01 | new transcription segment | 242 | 771 | |
THC0290_0144 | CDS | 178131:179366 + | A1107 B371 C109 | 9.66 | 1.37 | Protein of unknown function, putative transcriptional regulator | 245 | 2131 | |
THC0290_N_0130 | Rfp14 | indep | 208381:208488 + | A1765 B546 C143 | 8.21 | 1.04 | new transcription segment | 288 | 3520 |
THC0290_0184 | CDS | 232062:233117 - | A1083 B365 C107 | 12.67 | 1.50 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 315 | 2058 | |
THC0290_0185 | CDS | 233132:234121 - | A1088 B365 C107 | 12.81 | 2.91 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 316 | 2088 | |
THC0290_0186 | CDS | 234136:235122 - | A1088 B365 C107 | 13.11 | 1.91 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 317 | 2085 | |
THC0290_0187 | CDS | 235708:236373 + | A1765 B546 C143 | 9.01 | 1.47 | Probable transmembrane protein of unknown function | 318 | 3559 | |
THC0290_N_0147 | 3prime | 244080:244141 + | A1670 B542 C143 | 8.27 | 1.11 | new transcription segment | 331 | 3059 | |
THC0290_N_0150 | 3prime | 245892:245964 + | A1588 B533 C143 | 5.08 | 1.02 | new transcription segment | 336 | 2861 | |
THC0290_N_0155 | 5prime | 251187:251301 - | A1768 B546 C143 | 8.97 | 1.13 | new transcription segment | 343 | 3653 | |
THC0290_0204 | rnhA | CDS | 254545:255024 - | A601 B183 C44 | 8.85 | -1.05 | Ribonuclease HI | 350 | 1182 |
THC0290_0205 | purN | CDS | 255026:255595 - | A526 B180 C44 | 9.05 | -1.10 | Phosphoribosylglycinamide formyltransferase | 351 | 711 |
THC0290_0208 | rnc | CDS | 257618:258358 + | A600 B183 C44 | 10.28 | -1.34 | Ribonuclease III | 357 | 1113 |
THC0290_0211 | CDS | 260540:261250 - | A525 B180 C44 | 11.38 | -1.02 | Protein of unknown function | 362 | 707 | |
THC0290_0222 | CDS | 268913:269659 - | A1762 B546 C143 | 10.93 | 1.26 | Protein of unknown function precursor | 379 | 3403 | |
THC0290_N_0185 | 5prime | 297877:297936 - | A1769 B546 C143 | 9.89 | 1.40 | new transcription segment | 412 | 3751 | |
THC0290_0242 | CDS | 297963:298367 - | A1768 B546 C143 | 10.28 | 1.33 | Probable lyase | 413 | 3625 | |
THC0290_0243 | rbfA | CDS | 298577:298969 + | A1768 B546 C143 | 11.38 | 1.36 | Ribosome-binding factor A | 415 | 3604 |
THC0290_N_0189 | intra | 304144:304193 - | A678 B190 C47 | 8.91 | 1.38 | new transcription segment | 425 | 1469 | |
THC0290_N_0200 | 3prime | 323909:323965 - | A141 B55 C18 | 6.15 | -1.46 | new transcription segment | 452 | 180 | |
THC0290_0266 | CDS | 323966:324199 - | A1463 B506 C142 | 7.47 | -1.15 | Transcriptional regulator, XRE family | 454 | 2657 | |
THC0290_N_0205 | 5prime | 332826:332898 - | A1549 B523 C143 | 10.20 | 3.55 | new transcription segment | 465 | 2794 | |
THC0290_0275 | CDS | 332899:333825 - | A1862 B574 C149 | 13.06 | 3.43 | Protein of unknown function | 466 | 3961 | |
THC0290_0276 | CDS | 334046:334363 - | A1709 B546 C143 | 14.56 | 1.78 | Thioredoxin family protein | 468 | 3133 | |
THC0290_N_0214 | 3prime | 351138:351301 + | A1655 B542 C143 | 10.15 | -1.96 | new transcription segment | 492 | 3025 | |
THC0290_0292 | CDS | 351317:352102 - | A377 B143 C41 | 13.01 | 3.29 | Protein of unknown function | 493 | 482 | |
THC0290_N_0217 | 3prime | 355417:355516 - | A1643 B540 C143 | 8.92 | 1.19 | new transcription segment | 498 | 2985 | |
THC0290_0300 | CDS | 361814:364573 - | A1062 B352 C104 | 10.78 | -1.95 | Probable M36 fungalysin family metalloprotease precursor | 505 | 2029 | |
THC0290_N_0243 | 5prime | 400566:400739 + | A1763 B546 C143 | 9.24 | 1.15 | new transcription segment | 554 | 3445 | |
THC0290_0357 | rimM | CDS | 440423:440947 + | A600 B183 C44 | 11.44 | -1.58 | 16S rRNA processing protein RimM | 595 | 1111 |
THC0290_N_0262 | intra | 440948:441076 + | A600 B183 C44 | 10.60 | -1.59 | new transcription segment | 596 | 1112 | |
THC0290_0358 | yfiC | CDS | 441077:441781 + | A600 B183 C44 | 9.26 | -1.77 | Protein of unknown function YfiC | 597 | 1057 |
THC0290_N_0263 | 3prime-PT | 441466:441936 - | A1760 B546 C143 | 8.58 | 1.85 | new transcription segment | 598 | 3375 | |
THC0290_N_0267 | 5prime | 446871:447017 + | A1762 B546 C143 | 10.69 | 1.52 | new transcription segment | 607 | 3396 | |
THC0290_0365 | CDS | 447018:447473 + | A1762 B546 C143 | 10.40 | 1.17 | Protein of unknown function | 608 | 3385 | |
THC0290_N_0268 | intra | 447474:447645 + | A1762 B546 C143 | 10.90 | 1.15 | new transcription segment | 609 | 3386 | |
THC0290_N_0269 | 3prime-PT | 448689:448837 - | A1795 B549 C143 | 8.42 | 4.58 | new transcription segment | 612 | 3859 | |
THC0290_N_0271 | 3prime | 448838:448909 - | A1795 B549 C143 | 9.72 | 5.31 | new transcription segment | 614 | 3861 | |
THC0290_N_0272 | 3prime-PT | 448862:449419 + | A1351 B467 C136 | 7.37 | -2.63 | new transcription segment | 615 | 2509 | |
THC0290_0367 | CDS | 448910:449260 - | A1795 B549 C143 | 11.84 | 4.13 | Protein of unknown function precursor | 616 | 3860 | |
THC0290_0372 | oprP | CDS | 455757:457094 + | A1492 B512 C143 | 9.41 | -1.38 | Probable phosphate-selective porin precursor | 621 | 2706 |
THC0290_0392 | CDS | 477872:478558 + | A1711 B546 C143 | 9.64 | 1.62 | Protein of unknown function precursor | 649 | 3148 | |
THC0290_N_0282 | 3prime | 478559:479025 + | A1711 B546 C143 | 9.09 | 1.37 | new transcription segment | 651 | 3146 | |
THC0290_N_0298 | 3prime-PT | 500352:500565 - | A1760 B546 C143 | 8.27 | 1.48 | new transcription segment | 682 | 3376 | |
THC0290_0427 | CDS | 519196:519870 - | A1719 B546 C143 | 9.17 | 1.13 | Probable transcriptional regulator, TetR family | 710 | 3166 | |
THC0290_0429 | CDS | 521589:522020 + | A1509 B519 C143 | 8.95 | 1.57 | Hypothetical transmembrane protein | 712 | 2728 | |
THC0290_N_0309 | 3prime | 522021:522213 + | A1509 B519 C143 | 9.83 | 1.75 | new transcription segment | 713 | 2729 | |
THC0290_N_0310 | 3prime-PT | 522214:522414 + | A771 B233 C66 | 8.89 | 1.50 | new transcription segment | 714 | 1656 | |
THC0290_0430 | CDS | 522415:524397 + | A1765 B546 C143 | 10.57 | 1.27 | Cation-transporting ATPase, P-type | 715 | 3539 | |
THC0290_N_0311 | intra | 524398:524889 + | A1765 B546 C143 | 8.15 | 1.20 | new transcription segment | 716 | 3534 | |
THC0290_0431 | thiS | CDS | 525052:525258 + | A730 B209 C54 | 7.81 | 1.15 | Thiamine biosynthesis protein ThiS | 719 | 1598 |
THC0290_N_0313 | intra | 525259:525356 + | A730 B209 C54 | 7.27 | 1.07 | new transcription segment | 720 | 1599 | |
THC0290_N_0335 | 3prime | 563975:564212 - | A759 B225 C62 | 6.26 | -1.06 | new transcription segment | 774 | 1633 | |
THC0290_0467 | CDS | 564213:565787 - | A522 B180 C44 | 8.52 | -1.01 | Probable membrane associated S41A family C-terminal processing peptidase | 776 | 700 | |
THC0290_N_0337 | intra | 565788:565860 - | A310 B116 C33 | 10.13 | -1.12 | new transcription segment | 777 | 395 | |
THC0290_0468 | CDS | 565861:566289 - | A432 B164 C44 | 9.83 | -1.31 | dCMP deaminase | 778 | 556 | |
THC0290_N_0339 | 3prime-PT | 567081:567646 - | A1760 B546 C143 | 6.52 | 1.75 | new transcription segment | 782 | 3374 | |
THC0290_N_0343 | 5prime | 568633:568691 + | A962 B306 C84 | 5.63 | -1.86 | new transcription segment | 786 | 1904 | |
THC0290_0473 | nusA | CDS | 569172:570413 + | A639 B183 C44 | 12.85 | -1.02 | Transcription elongation protein NusA | 788 | 1390 |
THC0290_N_0344 | intra | 570414:570466 + | A639 B183 C44 | 13.85 | -1.20 | new transcription segment | 789 | 1391 | |
THC0290_0482 | CDS | 586087:587670 + | A1765 B546 C143 | 8.39 | 1.53 | Transposase IS1182 family | 809 | 3526 | |
THC0290_0485 | CDS | 589753:591324 + | A1765 B546 C143 | 8.47 | 1.28 | Transposase IS1182 family | 815 | 3527 | |
THC0290_0502 | CDS | 608390:609994 + | A1765 B546 C143 | 8.21 | 1.59 | Transposase IS1182 family | 839 | 3528 | |
THC0290_N_0363 | repeated_region | 609996:610101 - | A1765 B546 C143 | 10.50 | 1.01 | new transcription segment | 840 | 3535 | |
THC0290_0503 | CDS | 610102:610602 - | A1765 B546 C143 | 9.76 | 1.32 | Protein of unknown function precursor | 841 | 3544 | |
THC0290_N_0364 | 5prime | 610603:610665 - | A1764 B546 C143 | 10.34 | 1.02 | new transcription segment | 842 | 3452 | |
THC0290_0504 | CDS | 611442:612659 + | A1765 B546 C143 | 8.79 | 1.15 | Probable transposase | 843 | 3543 | |
THC0290_0525 | CDS | 640567:641241 - | A1765 B546 C143 | 11.40 | 1.12 | Hypothetical protein | 876 | 3554 | |
THC0290_0526 | CDS | 642217:643776 + | A1765 B546 C143 | 8.16 | 1.63 | Transposase IS1182 family | 878 | 3529 | |
THC0290_N_0396 | intra | 668261:668748 - | A1765 B546 C143 | 7.39 | 1.40 | new transcription segment | 921 | 3545 | |
THC0290_0550 | CDS | 668749:669369 - | A1765 B546 C143 | 9.64 | 1.62 | Protein of unknown function | 922 | 3546 | |
THC0290_N_0398 | 5prime | 673140:674020 - | A1765 B546 C143 | 9.44 | 1.10 | new transcription segment | 925 | 3547 | |
THC0290_0570 | CDS | 694331:695638 - | A1206 B415 C124 | 11.60 | 1.49 | Protein of unknown function | 956 | 2262 | |
THC0290_0578 | CDS | 703366:704418 - | A600 B183 C44 | 11.25 | -1.06 | Site-specific DNA-methyltransferase (adenine-specific) | 972 | 1083 | |
THC0290_N_0426 | 3prime-PT | 710623:710986 - | A1037 B342 C102 | 6.55 | 1.14 | new transcription segment | 985 | 1997 | |
THC0290_tRNA_0012 | tRNA | 710904:710976 + | A1769 B546 C143 | 11.60 | 1.23 | transfer RNA-Gly | 987 | 3777 | |
THC0290_0590 | CDS | 718261:719187 + | A576 B183 C44 | 7.28 | -1.12 | Putative 4Fe-4S binding protein | 996 | 854 | |
THC0290_0597 | deoC | CDS | 731804:732547 + | A600 B183 C44 | 10.17 | -1.04 | Deoxyribose-phosphate aldolase | 1008 | 1051 |
THC0290_N_0444 | 3prime | 745438:745510 - | A1762 B546 C143 | 14.20 | 1.47 | new transcription segment | 1028 | 3393 | |
THC0290_0611 | CDS | 745511:745864 - | A1762 B546 C143 | 12.77 | 1.31 | Protein of unknown function | 1029 | 3392 | |
THC0290_0615 | CDS | 750566:751084 + | A1407 B485 C140 | 11.29 | 1.22 | Carbonic anhydrase/acetyltransferase family protein | 1036 | 2581 | |
THC0290_0619 | bamA | CDS | 753852:756521 - | A545 B180 C44 | 11.31 | -1.33 | Outer membrane protein assembly complex precursor, BamA | 1043 | 779 |
THC0290_0620 | uppS | CDS | 756505:757245 - | A1353 B467 C136 | 10.08 | -1.64 | Di-trans,poly-cis-decaprenylcistransferase | 1044 | 2511 |
THC0290_0621 | CDS | 757252:757935 - | A1353 B467 C136 | 9.98 | -1.19 | Protein of unknown function precursor, putative outer membrane protein | 1045 | 2512 | |
THC0290_N_0465 | intra | 770297:771152 + | A1715 B546 C143 | 7.09 | 1.53 | new transcription segment | 1075 | 3159 | |
THC0290_N_0469 | intra | 780456:780505 - | A594 B183 C44 | 6.11 | -1.29 | new transcription segment | 1088 | 950 | |
THC0290_N_0487 | 3prime | 804893:804980 - | A942 B298 C82 | 5.58 | 1.06 | new transcription segment | 1131 | 1881 | |
THC0290_0670 | CDS | 807710:809137 - | A1762 B546 C143 | 9.70 | 1.05 | Probable nucleoside-diphosphate-sugar epimerase | 1135 | 3400 | |
THC0290_0679 | CDS | 816190:816630 + | A85 B40 C15 | 7.31 | 1.01 | Probable transmembrane protein of unknown function | 1145 | 101 | |
THC0290_0680 | CDS | 816720:817085 + | A1768 B546 C143 | 9.32 | 1.44 | Protein of unknown function | 1146 | 3721 | |
THC0290_N_0517 | 3prime | 845017:845453 + | A1643 B540 C143 | 7.36 | 2.04 | new transcription segment | 1193 | 2986 | |
THC0290_0710 | ribH | CDS | 846778:847347 - | A600 B183 C44 | 11.78 | -1.01 | Riboflavin synthase, beta subunit | 1198 | 1103 |
THC0290_N_0521 | intra | 847348:847417 - | A454 B168 C44 | 10.47 | -1.66 | new transcription segment | 1199 | 589 | |
THC0290_0711 | CDS | 847418:848209 - | A600 B183 C44 | 12.78 | -1.71 | Protein of unknown function | 1200 | 1104 | |
THC0290_0718 | CDS | 855109:855891 + | A557 B183 C44 | 9.17 | -1.03 | Probable ABC-type iron(III)-transport system, ATPase component | 1209 | 813 | |
THC0290_0726 | rpmH | CDS | 863440:863601 - | A1457 B505 C142 | 11.77 | -1.49 | 50S ribosomal protein L34 | 1221 | 2650 |
THC0290_N_0528 | 5prime | 863602:863656 - | A1457 B505 C142 | 10.59 | -1.47 | new transcription segment | 1222 | 2651 | |
THC0290_0738 | topA | CDS | 875152:877668 + | A544 B180 C44 | 10.52 | -1.25 | DNA topoisomerase I | 1242 | 768 |
THC0290_N_0545 | 3prime | 887358:887776 + | A574 B183 C44 | 6.57 | -1.02 | new transcription segment | 1258 | 850 | |
THC0290_0750 | CDS | 891604:892050 - | A801 B244 C67 | 11.08 | -1.64 | Probable DnaJ-class molecular chaperone | 1266 | 1692 | |
THC0290_N_0550 | 5prime | 892051:892112 - | A801 B244 C67 | 11.71 | -1.84 | new transcription segment | 1267 | 1693 | |
THC0290_N_0561 | 3prime | 908145:908243 - | A281 B102 C28 | 6.81 | 1.00 | new transcription segment | 1293 | 364 | |
THC0290_N_0568 | 5prime | 917638:917940 + | A1707 B546 C143 | 11.40 | 1.00 | new transcription segment | 1310 | 3127 | |
THC0290_0774 | CDS | 922230:925658 - | A1772 B546 C143 | 8.64 | -1.59 | Methylmalonyl-CoA mutase | 1316 | 3796 | |
THC0290_0788 | CDS | 938186:938767 + | A1795 B549 C143 | 11.06 | 2.36 | Protein of unknown function precursor | 1337 | 3853 | |
THC0290_N_0578 | intra | 938768:938895 + | A1765 B546 C143 | 7.89 | 1.98 | new transcription segment | 1338 | 3482 | |
THC0290_0797 | pepT | CDS | 950970:952244 - | A525 B180 C44 | 11.18 | -1.46 | Tripeptide aminopeptidase | 1355 | 705 |
THC0290_0814 | CDS | 969702:970469 - | A1231 B419 C125 | 10.34 | 1.30 | Protein of unknown function precursor | 1385 | 2304 | |
THC0290_0815 | oxaA | CDS | 970617:972518 - | A800 B244 C67 | 11.60 | -1.20 | Inner membrane protein OxaA | 1386 | 1690 |
THC0290_0816 | pyrG | CDS | 972612:974225 - | A800 B244 C67 | 11.59 | -1.22 | CTP synthase | 1388 | 1691 |
THC0290_0820 | CDS | 977782:979488 - | A749 B218 C58 | 9.72 | -1.03 | Protein of unknown function | 1395 | 1623 | |
THC0290_0832 | dcp2 | CDS | 990238:992370 - | A1796 B549 C143 | 10.23 | 1.27 | Peptidyl-dipeptidase precursor Dcp2 | 1410 | 3876 |
THC0290_0836 | icd | CDS | 994825:996051 + | A257 B91 C27 | 14.57 | 1.14 | Isocitrate dehydrogenase (NADP+) | 1419 | 338 |
THC0290_N_0615 | 3prime-PT | 996138:998041 + | A1535 B521 C143 | 7.75 | 1.81 | new transcription segment | 1420 | 2776 | |
THC0290_0842 | relA | CDS | 1001835:1004054 + | A1564 B526 C143 | 12.41 | 1.30 | GTP diphosphokinase | 1428 | 2831 |
THC0290_N_0617 | 3prime | 1004055:1004461 + | A1178 B404 C122 | 7.45 | 1.78 | new transcription segment | 1429 | 2215 | |
THC0290_0849 | CDS | 1009303:1009518 - | A501 B175 C44 | 6.26 | -1.35 | Hypothetical transmembrane protein | 1437 | 669 | |
THC0290_0850 | yjeB | CDS | 1009520:1009939 - | A894 B277 C76 | 6.73 | -1.14 | Protein of unknown function YjeB | 1438 | 1822 |
THC0290_0852 | nadC | CDS | 1011355:1012212 + | A525 B180 C44 | 10.29 | -1.03 | Nicotinate-nucleotide diphosphorylase (carboxylating) | 1441 | 708 |
THC0290_N_0621 | 3prime | 1016422:1016591 - | A1765 B546 C143 | 11.57 | 1.64 | new transcription segment | 1446 | 3553 | |
THC0290_0880 | coaE | CDS | 1037592:1038176 + | A1765 B546 C143 | 10.14 | 1.08 | Dephospho-CoA kinase | 1480 | 3560 |
THC0290_N_0633 | intra | 1038177:1038243 + | A1765 B546 C143 | 8.21 | 1.37 | new transcription segment | 1481 | 3561 | |
THC0290_0881 | rprX | CDS | 1038245:1039828 + | A1765 B546 C143 | 10.24 | 1.57 | Two-component system sensor histidine kinase RprX | 1482 | 3521 |
THC0290_0894 | (yfcA) | CDS | 1053252:1054037 + | A1753 B546 C143 | 10.50 | 1.03 | Probable transmembrane protein of unknown function | 1504 | 3347 |
THC0290_0939 | rlmF | CDS | 1106178:1107122 - | A106 B45 C16 | 9.31 | -1.12 | Ribosomal RNA large subunit methyltransferase F | 1581 | 132 |
THC0290_0940 | CDS | 1107201:1107863 - | A600 B183 C44 | 9.38 | -1.07 | Probable thiamine diphosphokinase | 1582 | 1049 | |
THC0290_0942 | clpB | CDS | 1110287:1112887 + | A1213 B415 C124 | 12.25 | 1.39 | ATPase with chaperone activity ATP-binding subunit | 1585 | 2277 |
THC0290_N_0675 | Rfp45 | indep | 1119827:1119911 - | A1765 B546 C143 | 7.34 | 1.09 | new transcription segment | 1595 | 3510 |
THC0290_N_0676 | 3prime | 1120015:1120649 + | A150 B59 C19 | 7.36 | -1.03 | new transcription segment | 1596 | 189 | |
THC0290_N_0677 | 5prime | 1120961:1121203 - | A1768 B546 C143 | 9.23 | 1.03 | new transcription segment | 1598 | 3658 | |
THC0290_N_0685 | intra | 1130912:1130976 - | A1127 B376 C109 | 9.64 | 1.23 | new transcription segment | 1618 | 2159 | |
THC0290_0960 | CDS | 1130977:1132209 - | A1779 B546 C143 | 9.86 | 1.57 | Major facilitator superfamily (MFS) permease | 1619 | 3815 | |
THC0290_0968 | CDS | 1137665:1138330 + | A1601 B535 C143 | 10.04 | 1.16 | Protein of unknown function | 1631 | 2880 | |
THC0290_0970 | oxyR | CDS | 1138817:1139758 - | A1861 B573 C149 | 9.39 | 1.11 | Redox-sensitive transcriptional activator OxyR | 1634 | 3960 |
THC0290_0971 | CDS | 1139820:1141016 - | A108 B45 C16 | 8.82 | -1.26 | Protein of unknown function | 1635 | 136 | |
THC0290_N_0693 | intra | 1141017:1141163 - | A108 B45 C16 | 10.52 | -1.18 | new transcription segment | 1636 | 137 | |
THC0290_0972 | sodC | CDS | 1141164:1141685 - | A107 B45 C16 | 10.56 | -1.13 | Superoxide dismutase [Cu-Zn] | 1637 | 134 |
THC0290_N_0694 | 3prime | 1141686:1141770 - | A99 B44 C16 | 7.30 | -1.13 | new transcription segment | 1638 | 120 | |
THC0290_N_0695 | Rfp46 | indep | 1143858:1144033 - | A1709 B546 C143 | 9.80 | 1.11 | new transcription segment | 1641 | 3136 |
THC0290_N_0696 | 5prime | 1143859:1144080 + | A1765 B546 C143 | 6.95 | 1.41 | new transcription segment | 1642 | 3557 | |
THC0290_0977 | CDS | 1147602:1149359 - | A1795 B549 C143 | 6.25 | 2.13 | Esterase/lipase/thioesterase family protein precursor | 1647 | 3864 | |
THC0290_0978 | katG | CDS | 1149873:1152080 + | A1791 B549 C143 | 12.32 | 5.76 | Bi-functional catalase-peroxidase | 1649 | 3846 |
THC0290_0979 | CDS | 1152256:1152894 + | A1864 B574 C149 | 14.29 | 1.54 | Probable peroxiredoxin | 1650 | 3964 | |
THC0290_N_0699 | intra | 1152895:1152978 + | A1864 B574 C149 | 10.28 | 2.53 | new transcription segment | 1651 | 3965 | |
THC0290_0980 | CDS | 1152979:1153290 + | A1863 B574 C149 | 13.77 | 1.82 | Thioredoxin family protein | 1652 | 3962 | |
THC0290_0981 | CDS | 1153330:1153587 + | A1864 B574 C149 | 12.79 | 2.21 | Hypothetical protein | 1653 | 3963 | |
THC0290_N_0701 | 3prime-PT | 1153613:1154322 + | A1661 B542 C143 | 7.37 | 3.26 | new transcription segment | 1654 | 3034 | |
THC0290_0993 | CDS | 1167298:1168647 + | A985 B310 C84 | 7.63 | -1.17 | Major facilitator superfamily (MFS) permease | 1670 | 1940 | |
THC0290_N_0709 | 5prime | 1168710:1168824 + | A838 B254 C69 | 10.45 | 1.12 | new transcription segment | 1671 | 1746 | |
THC0290_1006 | CDS | 1184239:1184796 - | A1473 B507 C142 | 8.02 | -1.36 | LemA family protein | 1694 | 2668 | |
THC0290_N_0722 | 5prime | 1191365:1191583 - | A1559 B526 C143 | 11.42 | 1.14 | new transcription segment | 1702 | 2822 | |
THC0290_N_0723 | intra | 1192145:1192355 + | A1747 B546 C143 | 11.27 | 2.03 | new transcription segment | 1705 | 3248 | |
THC0290_1043 | hupA | CDS | 1220069:1220365 - | A540 B180 C44 | 12.92 | -1.18 | Histone-like bacterial DNA-binding protein HU-alpha | 1752 | 744 |
THC0290_1048 | CDS | 1225034:1227307 - | A1156 B395 C120 | 8.67 | -1.01 | Protein of unknown function precursor, putative adhesin | 1758 | 2190 | |
THC0290_1070 | CDS | 1247959:1249245 + | A523 B180 C44 | 10.47 | -1.20 | Glycosyl transferase, group 1 family protein | 1789 | 703 | |
THC0290_N_0755 | 5prime | 1260033:1260135 - | A1768 B546 C143 | 9.89 | 1.05 | new transcription segment | 1805 | 3603 | |
THC0290_1087 | CDS | 1267536:1268105 - | A394 B150 C42 | 8.26 | -1.38 | Protein of unknown function precursor | 1815 | 504 | |
THC0290_N_0761 | 5prime | 1274218:1274287 + | A1768 B546 C143 | 8.13 | 1.08 | new transcription segment | 1823 | 3659 | |
THC0290_N_0766 | 3prime | 1282771:1282957 + | A1131 B379 C111 | 10.76 | -1.26 | new transcription segment | 1834 | 2163 | |
THC0290_N_0767 | intra | 1283071:1283169 + | A1556 B525 C143 | 8.31 | -1.42 | new transcription segment | 1835 | 2815 | |
THC0290_N_0768 | 3prime | 1284560:1285017 - | A190 B69 C21 | 6.80 | -1.19 | new transcription segment | 1837 | 236 | |
THC0290_1100 | yojE | CDS | 1285018:1285905 - | A572 B183 C44 | 7.97 | -1.33 | Probable permease YojE | 1839 | 846 |
THC0290_1101 | CDS | 1286214:1287986 - | A331 B122 C33 | 9.23 | -1.18 | Putative sugar-transporting permease | 1841 | 430 | |
THC0290_N_0771 | Rfp49 | indep | 1288802:1288918 - | A1765 B546 C143 | 7.17 | 1.12 | new transcription segment | 1843 | 3531 |
THC0290_N_0774 | 5prime | 1290924:1291096 - | A1765 B546 C143 | 12.04 | 1.44 | new transcription segment | 1847 | 3541 | |
THC0290_N_0779 | 3prime | 1297987:1298261 - | A1644 B540 C143 | 7.56 | 2.38 | new transcription segment | 1857 | 2989 | |
THC0290_1110 | CDS | 1298262:1298678 - | A1721 B546 C143 | 10.55 | 1.98 | Probable arsenate reductase (glutaredoxin) | 1859 | 3177 | |
THC0290_1111 | CDS | 1298680:1299294 - | A1721 B546 C143 | 11.30 | 2.40 | Protein of unknown function | 1860 | 3178 | |
THC0290_1112 | CDS | 1299295:1299420 - | A1721 B546 C143 | 10.44 | 2.70 | Hypothetical protein | 1861 | 3179 | |
THC0290_1113 | CDS | 1299423:1299896 - | A1721 B546 C143 | 11.35 | 2.80 | Protein of unknown function | 1862 | 3175 | |
THC0290_N_0781 | intra | 1299897:1299959 - | A1721 B546 C143 | 12.66 | 3.32 | new transcription segment | 1863 | 3176 | |
THC0290_1114 | CDS | 1299960:1300283 - | A1721 B546 C143 | 10.86 | 4.11 | Probable transcriptional regulator, ArsR family | 1864 | 3174 | |
THC0290_1137 | CDS | 1329295:1330215 - | A1795 B549 C143 | 6.57 | 2.10 | Probable transcriptional regulator, AraC family | 1895 | 3873 | |
THC0290_1138 | CDS | 1330262:1330645 - | A1795 B549 C143 | 7.02 | 2.38 | Hypothetical protein | 1896 | 3857 | |
THC0290_1158 | CDS | 1349866:1350774 + | A1141 B384 C112 | 5.15 | 1.44 | Probable ribonuclease BN | 1916 | 2174 | |
THC0290_1223 | CDS | 1418395:1418796 - | A1795 B549 C143 | 9.54 | 1.27 | Protein of unknown function | 2000 | 3874 | |
THC0290_1224 | CDS | 1418799:1419512 - | A1795 B549 C143 | 11.05 | 1.22 | Protein of unknown function | 2002 | 3875 | |
THC0290_N_0809 | intra | 1437888:1437991 - | A543 B180 C44 | 7.20 | -1.67 | new transcription segment | 2031 | 765 | |
THC0290_1245 | CDS | 1438036:1438314 - | A545 B180 C44 | 11.79 | -1.49 | Thiol:disulfide interchange protein, C-terminal region | 2032 | 772 | |
THC0290_N_0811 | intra | 1438315:1438460 - | A545 B180 C44 | 12.47 | -1.52 | new transcription segment | 2033 | 774 | |
THC0290_1246 | CDS | 1438461:1439183 - | A545 B180 C44 | 12.51 | -1.85 | Thiol:disulfide interchange lipoprotein precursor, N-terminal region | 2034 | 773 | |
THC0290_N_0815 | 3prime | 1446042:1446224 - | A1762 B546 C143 | 10.16 | 1.69 | new transcription segment | 2043 | 3426 | |
THC0290_1252 | CDS | 1446225:1446704 - | A1762 B546 C143 | 11.32 | 1.38 | Universal stress protein, UspA family | 2044 | 3425 | |
THC0290_N_0816 | intra | 1446727:1446954 - | A1795 B549 C143 | 8.48 | 1.07 | new transcription segment | 2045 | 3872 | |
THC0290_1254 | CDS | 1448226:1451315 + | A1664 B542 C143 | 6.99 | 1.37 | Probable transmembrane protein | 2047 | 3043 | |
THC0290_1258 | CDS | 1455281:1456540 - | A1795 B549 C143 | 6.99 | 1.81 | Putative capsular polysaccharide biosynthesis protein | 2051 | 3866 | |
THC0290_1270 | CDS | 1468900:1469292 + | A1615 B535 C143 | 9.88 | 1.00 | Protein of unknown function | 2068 | 2917 | |
THC0290_N_0822 | 3prime | 1469293:1469476 + | A1615 B535 C143 | 8.82 | 1.24 | new transcription segment | 2069 | 2918 | |
THC0290_1278 | hisG | CDS | 1475685:1476542 - | A709 B202 C53 | 6.34 | -1.20 | ATP phosphoribosyltransferase | 2079 | 1543 |
THC0290_N_0833 | 5prime | 1489143:1489202 - | A1709 B546 C143 | 9.78 | 1.53 | new transcription segment | 2099 | 3140 | |
THC0290_N_0838 | intra | 1494771:1494824 - | A600 B183 C44 | 11.52 | -1.15 | new transcription segment | 2111 | 1082 | |
THC0290_1297 | lpxC/fabZ | CDS | 1494825:1496213 - | A600 B183 C44 | 11.79 | -1.31 | Bifunctional enzyme : UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase and (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase | 2112 | 1086 |
THC0290_1298 | lpxD | CDS | 1496216:1497235 - | A600 B183 C44 | 11.08 | -1.70 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | 2113 | 1109 |
THC0290_N_0839 | 5prime | 1497236:1497324 - | A460 B168 C44 | 8.09 | -1.02 | new transcription segment | 2114 | 598 | |
THC0290_1300 | CDS | 1498732:1499442 + | A183 B67 C21 | 5.46 | -1.57 | Probable transmembrane protein of unknown function | 2117 | 229 | |
THC0290_1309 | gene | 1510782:1511459 + | A1765 B546 C143 | 10.59 | 1.13 | Fragment of two-component system sensor histidine kinase (part 1) | 2133 | 3489 | |
THC0290_1320 | CDS | 1521863:1523305 - | A600 B183 C44 | 11.76 | -1.79 | Phosphate transporter family protein | 2144 | 1105 | |
THC0290_1321 | CDS | 1523330:1523983 - | A542 B180 C44 | 10.67 | -1.93 | Protein of unknown function | 2145 | 762 | |
THC0290_1323 | CDS | 1525827:1527404 + | A526 B180 C44 | 9.51 | -1.02 | Probable S41 family peptidase | 2147 | 709 | |
THC0290_1337 | CDS | 1540897:1543509 + | A1762 B546 C143 | 9.67 | 1.01 | Two-component system sensor histidine kinase | 2163 | 3388 | |
THC0290_1344 | CDS | 1552913:1553296 - | A1795 B549 C143 | 6.33 | -1.29 | Transposase IS1 family | 2172 | 3856 | |
THC0290_N_0852 | 3prime | 1558388:1558447 + | A867 B263 C71 | 4.89 | 1.24 | new transcription segment | 2178 | 1792 | |
THC0290_1360 | CDS | 1571085:1571513 - | A785 B238 C67 | 9.52 | -1.43 | Protein of unknown function | 2199 | 1672 | |
THC0290_1402 | CDS | 1619248:1620525 - | A600 B183 C44 | 9.55 | -1.16 | Probable S41 family peptidase precursor | 2279 | 1100 | |
THC0290_1403 | panB1 | CDS | 1620572:1621390 - | A517 B180 C44 | 10.05 | -1.07 | 3-methyl-2-oxobutanoate hydroxymethyltransferase panB1 | 2280 | 690 |
THC0290_N_0903 | Rfp64 | indep | 1635872:1635993 - | A1768 B546 C143 | 9.96 | 1.03 | new transcription segment | 2299 | 3683 |
THC0290_N_0906 | intra | 1642443:1642537 - | A1716 B546 C143 | 9.61 | 1.05 | new transcription segment | 2308 | 3162 | |
THC0290_1424 | CDS | 1649508:1651811 + | A1787 B549 C143 | 10.72 | 1.61 | Probable aminotransferase | 2316 | 3838 | |
THC0290_N_0921 | 3prime-PT | 1668796:1669027 - | A1651 B542 C143 | 5.34 | 1.10 | new transcription segment | 2338 | 3012 | |
THC0290_N_0922 | 3prime | 1669028:1669134 - | A1857 B572 C149 | 8.02 | 1.67 | new transcription segment | 2339 | 3955 | |
THC0290_1436 | CDS | 1669135:1669644 - | A1605 B535 C143 | 10.05 | 1.47 | Protein of unknown function | 2341 | 2892 | |
THC0290_N_0924 | intra | 1669645:1669745 - | A1606 B535 C143 | 10.11 | 1.81 | new transcription segment | 2342 | 2893 | |
THC0290_N_0929 | 3prime | 1673625:1673962 + | A1644 B540 C143 | 6.35 | 1.19 | new transcription segment | 2352 | 2990 | |
THC0290_N_0930 | intra | 1675609:1675691 - | A1765 B546 C143 | 8.99 | 2.21 | new transcription segment | 2354 | 3540 | |
THC0290_1444 | CDS | 1675692:1676540 - | A1762 B546 C143 | 10.14 | 1.93 | Protein of unknown function | 2355 | 3424 | |
THC0290_1455 | CDS | 1687990:1688883 + | A1453 B504 C142 | 5.63 | -1.07 | Probable transcriptional regulator, LysR family | 2381 | 2645 | |
THC0290_N_0953 | 3prime | 1704683:1704758 - | A1126 B376 C109 | 9.44 | 1.38 | new transcription segment | 2403 | 2158 | |
THC0290_N_0963 | 3prime-PT | 1717045:1717466 + | A1672 B543 C143 | 6.80 | -1.13 | new transcription segment | 2419 | 3066 | |
THC0290_N_0964 | 5prime | 1718789:1718853 - | A1068 B355 C104 | 12.91 | 1.02 | new transcription segment | 2422 | 2039 | |
THC0290_N_0976 | 3prime | 1730076:1730154 - | A1573 B530 C143 | 8.39 | 1.55 | new transcription segment | 2449 | 2842 | |
THC0290_1494 | CDS | 1730155:1732128 - | A1761 B546 C143 | 10.66 | 1.12 | Probable ribonuclease | 2450 | 3382 | |
THC0290_N_0977 | 5prime | 1732129:1732257 - | A1768 B546 C143 | 10.21 | 1.24 | new transcription segment | 2451 | 3627 | |
THC0290_1496 | CDS | 1735654:1738056 + | A536 B180 C44 | 11.86 | -1.59 | Putative pyruvate/branched-chain alpha-keto acid dehydrogenase (E1) component, alpha and beta subunits | 2454 | 733 | |
THC0290_1498 | rho | CDS | 1739236:1740987 - | A520 B180 C44 | 11.73 | -1.03 | Transcription termination factor Rho | 2458 | 698 |
THC0290_N_0985 | 3prime | 1746723:1746924 - | A500 B175 C44 | 5.65 | -1.29 | new transcription segment | 2468 | 667 | |
THC0290_1505 | CDS | 1746925:1747419 - | A1456 B505 C142 | 6.98 | -1.01 | Putative phosphoesterase | 2470 | 2649 | |
THC0290_1522 | CDS | 1769814:1770386 - | A852 B256 C70 | 7.42 | -1.86 | Protein of unknown function related to microcin resistance protein McbG | 2494 | 1773 | |
THC0290_N_0997 | repeated_region | 1782224:1782801 - | A568 B183 C44 | 6.61 | -1.12 | new transcription segment | 2503 | 842 | |
THC0290_1528 | CDS | 1782802:1783425 - | A600 B183 C44 | 9.36 | -1.70 | Acetyltransferase, GNAT family | 2505 | 1064 | |
THC0290_1529 | CDS | 1783418:1783774 - | A600 B183 C44 | 10.19 | -1.56 | Protein of unknown function | 2506 | 1063 | |
THC0290_N_0999 | intra | 1783775:1784020 - | A600 B183 C44 | 10.96 | -1.39 | new transcription segment | 2507 | 1065 | |
THC0290_N_1000 | intra | 1785218:1785270 - | A598 B183 C44 | 9.19 | -1.02 | new transcription segment | 2510 | 996 | |
THC0290_1531 | CDS | 1785271:1786122 - | A598 B183 C44 | 10.23 | -1.11 | Probable outer membrane protein precursor, OmpA family | 2511 | 995 | |
THC0290_N_1004 | 3prime | 1788343:1788481 - | A1665 B542 C143 | 10.26 | 1.04 | new transcription segment | 2517 | 3045 | |
THC0290_1543 | CDS | 1797232:1798140 + | A1765 B546 C143 | 10.44 | 1.44 | Probable nucleoside-diphosphate sugar epimerase | 2537 | 3481 | |
THC0290_N_1028 | 5prime | 1806149:1806265 + | A894 B277 C76 | 9.30 | -1.69 | new transcription segment | 2560 | 1823 | |
THC0290_1553 | CDS | 1806266:1806697 + | A309 B116 C33 | 8.82 | -1.54 | NUDIX hydrolase | 2561 | 394 | |
THC0290_N_1030 | 3prime-PT | 1811120:1811571 - | A756 B223 C61 | 6.73 | -1.20 | new transcription segment | 2567 | 1630 | |
THC0290_N_1031 | 3prime | 1811565:1811830 + | A1643 B540 C143 | 8.23 | 1.13 | new transcription segment | 2568 | 2983 | |
THC0290_1569 | CDS | 1824808:1827336 + | A1796 B549 C143 | 8.75 | 2.35 | Probable TonB-dependent outer membrane siderophore receptor precursor | 2592 | 3877 | |
THC0290_1573 | CDS | 1830690:1831748 + | A1115 B373 C109 | 11.03 | 1.22 | Protein of unknown function | 2599 | 2145 | |
THC0290_N_1053 | 3prime | 1840491:1841109 - | A1570 B528 C143 | 8.52 | 1.20 | new transcription segment | 2615 | 2838 | |
THC0290_1594 | CDS | 1848581:1850773 - | A1795 B549 C143 | 7.61 | 2.85 | Protein of unknown function | 2630 | 3865 | |
THC0290_1595 | CDS | 1851066:1852952 + | A1762 B546 C143 | 11.50 | 1.13 | Protein of unknown function precursor, putative adhesin | 2631 | 3405 | |
THC0290_N_1058 | intra | 1852953:1853067 + | A1762 B546 C143 | 9.39 | 1.08 | new transcription segment | 2632 | 3406 | |
THC0290_N_1060 | 3prime | 1853392:1853555 - | A376 B143 C41 | 12.88 | 2.27 | new transcription segment | 2634 | 481 | |
THC0290_1596 | trxB1 | CDS | 1853556:1854503 - | A377 B143 C41 | 12.96 | 2.37 | Thioredoxin-disulfide reductase | 2635 | 483 |
THC0290_N_1062 | 5prime | 1856154:1856259 - | A926 B287 C78 | 8.18 | -1.37 | new transcription segment | 2638 | 1861 | |
THC0290_1599 | CDS | 1857456:1858334 - | A601 B183 C44 | 9.59 | -1.02 | Probable transmembrane protein of unknown function. Predicted permease | 2642 | 1158 | |
THC0290_N_1072 | 5prime | 1868837:1869005 - | A838 B254 C69 | 10.55 | 1.28 | new transcription segment | 2658 | 1747 | |
THC0290_1618 | CDS | 1879036:1879245 + | A1250 B419 C125 | 4.98 | -1.34 | Hypothetical protein | 2675 | 2364 | |
THC0290_N_1087 | intra | 1888625:1888779 + | A1207 B415 C124 | 11.71 | 1.33 | new transcription segment | 2693 | 2265 | |
THC0290_1637 | fsr | CDS | 1898436:1899650 - | A573 B183 C44 | 7.93 | -1.22 | Major facilitator superfamily (MFS) permease. Fosmidomycin resistance protein | 2711 | 849 |
THC0290_1640 | CDS | 1901160:1902068 - | A1714 B546 C143 | 10.13 | 1.14 | Probable transmembrane protein of unknown function | 2716 | 3155 | |
THC0290_1657 | glnA | CDS | 1920647:1922836 - | A961 B305 C84 | 11.94 | -1.25 | Glutamate--ammonia ligase | 2746 | 1903 |
THC0290_N_1120 | 3prime | 1932156:1932279 - | A536 B180 C44 | 8.34 | -1.70 | new transcription segment | 2764 | 732 | |
THC0290_1668 | vdh | CDS | 1932280:1933383 - | A536 B180 C44 | 12.85 | -1.71 | Valine dehydrogenase | 2765 | 734 |
THC0290_1671 | csaA | CDS | 1935831:1936169 - | A997 B316 C86 | 6.87 | 1.24 | Protein secretion chaperone CsaA | 2768 | 1952 |
THC0290_N_1125 | Rfp73 | indep | 1939566:1939699 + | A1768 B546 C143 | 5.27 | 1.25 | new transcription segment | 2771 | 3684 |
THC0290_N_1134 | Rfp74 | indep | 1954656:1954725 - | A1749 B546 C143 | 7.02 | 1.37 | new transcription segment | 2789 | 3325 |
THC0290_1685 | CDS | 1957762:1958214 + | A1720 B546 C143 | 12.79 | 2.94 | Probable transcriptional regulator, MarR-family | 2796 | 3172 | |
THC0290_1686 | CDS | 1958217:1958849 + | A1720 B546 C143 | 14.08 | 2.26 | Nitroreductase | 2797 | 3170 | |
THC0290_1687 | yceI | CDS | 1958866:1959432 + | A1720 B546 C143 | 14.34 | 2.08 | Protein of unknown function YceI precursor | 2798 | 3171 |
THC0290_N_1138 | 3prime | 1959433:1959477 + | A1720 B546 C143 | 8.45 | 2.77 | new transcription segment | 2799 | 3173 | |
THC0290_N_1140 | intra | 1961109:1961220 + | A718 B205 C53 | 6.45 | -1.02 | new transcription segment | 2803 | 1560 | |
THC0290_N_1150 | intra | 1977128:1977205 - | A1768 B546 C143 | 10.78 | 1.02 | new transcription segment | 2830 | 3702 | |
THC0290_N_1151 | repeated_region | 1977443:1978208 - | A1768 B546 C143 | 7.95 | 1.15 | new transcription segment | 2832 | 3596 | |
THC0290_N_1154 | 5prime | 1987994:1988043 + | A931 B292 C81 | 5.58 | -1.44 | new transcription segment | 2843 | 1867 | |
THC0290_N_1157 | 3prime | 1990779:1991250 + | A690 B194 C49 | 7.11 | -1.02 | new transcription segment | 2848 | 1496 | |
THC0290_N_1160 | 3prime | 1993681:1993757 - | A943 B298 C82 | 7.03 | 3.29 | new transcription segment | 2854 | 1882 | |
THC0290_1718 | rpsT | CDS | 2002916:2003167 - | A786 B238 C67 | 12.66 | -1.23 | 30S ribosomal protein S20 | 2863 | 1673 |
THC0290_N_1163 | 3prime | 2003168:2003329 - | A786 B238 C67 | 13.01 | -1.06 | new transcription segment | 2864 | 1674 | |
THC0290_tRNA_0033 | tRNA | 2003330:2003404 - | A1769 B546 C143 | 11.12 | 1.15 | transfer RNA-Glu | 2865 | 3759 | |
THC0290_tRNA_0034 | tRNA | 2003436:2003507 - | A1769 B546 C143 | 10.64 | 1.26 | transfer RNA-Glu | 2866 | 3760 | |
THC0290_N_1167 | intra | 2006194:2006263 + | A1779 B546 C143 | 10.62 | 1.33 | new transcription segment | 2871 | 3820 | |
THC0290_1742 | maf | CDS | 2030394:2030981 + | A600 B183 C44 | 9.27 | -1.17 | Septum formation protein Maf | 2902 | 1114 |
THC0290_N_1179 | intra | 2030982:2031255 + | A313 B119 C33 | 7.69 | -1.23 | new transcription segment | 2903 | 398 | |
THC0290_1753 | CDS | 2040786:2040938 - | A540 B180 C44 | 15.72 | -1.56 | Hypothetical protein | 2924 | 741 | |
THC0290_1779 | bluB/cobT | CDS | 2061863:2063539 - | A314 B119 C33 | 7.27 | -1.18 | Bifunctional protein : cob(II)yrinic acid a,c-diamide reductase and nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | 2962 | 399 |
THC0290_N_1199 | Rfp80 | indep | 2063397:2064482 + | A1779 B546 C143 | 7.52 | 1.20 | new transcription segment | 2963 | 3809 |
THC0290_N_1200 | intra | 2063540:2063723 - | A513 B180 C44 | 8.28 | -1.63 | new transcription segment | 2964 | 685 | |
THC0290_1780 | cobU | CDS | 2063724:2064236 - | A606 B183 C44 | 8.94 | -1.74 | Bifunctional protein cobU : adenosylcobinamide kinase and adenosylcobinamide-phosphate guanylyltransferase | 2966 | 1257 |
THC0290_1786 | CDS | 2068911:2069726 + | A1795 B549 C143 | 9.36 | 2.60 | Probable transmembrane protein of unknown function | 2972 | 3869 | |
THC0290_1803 | apbE | CDS | 2087394:2088356 - | A1088 B365 C107 | 11.45 | 1.13 | Membrane-associated protein involved in thiamine biosynthesis | 2998 | 2101 |
THC0290_1804 | CDS | 2088365:2088802 - | A1088 B365 C107 | 11.11 | 1.50 | Thioredoxin family protein | 2999 | 2081 | |
THC0290_1811 | CDS | 2096360:2096578 - | A1088 B365 C107 | 9.15 | 1.39 | Protein of unknown function | 3010 | 2096 | |
THC0290_1813 | CDS | 2097360:2097836 - | A1088 B365 C107 | 12.46 | 1.40 | Probable transmembrane protein of unknown function | 3013 | 2086 | |
THC0290_1814 | CDS | 2097857:2099929 - | A1088 B365 C107 | 11.82 | 1.96 | Probable TonB-dependent outer membrane receptor precursor | 3014 | 2082 | |
THC0290_1815 | CDS | 2100027:2100941 + | A1088 B365 C107 | 13.53 | 1.21 | Protein of unknown function precursor | 3015 | 2080 | |
THC0290_1816 | CDS | 2100947:2101285 + | A1088 B365 C107 | 12.50 | 1.16 | Protein of unknown function | 3016 | 2087 | |
THC0290_N_1215 | 3prime | 2101286:2101337 + | A1717 B546 C143 | 5.97 | 2.25 | new transcription segment | 3017 | 3163 | |
THC0290_N_1216 | 3prime-PT | 2101338:2101475 + | A1493 B512 C143 | 5.11 | 1.94 | new transcription segment | 3018 | 2708 | |
THC0290_1818 | CDS | 2103430:2107788 + | A1762 B546 C143 | 8.23 | 2.72 | Protein of unknown function precursor, putative adhesin | 3021 | 3404 | |
THC0290_1819 | CDS | 2107930:2110392 + | A777 B236 C67 | 11.42 | -1.18 | Probable TonB-dependent outer membrane receptor precursor | 3022 | 1663 | |
THC0290_1820 | fabH2 | CDS | 2110699:2111706 - | A45 B25 C13 | 10.61 | -1.13 | 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH2 | 3024 | 52 |
THC0290_1821 | CDS | 2111809:2112582 + | A1264 B422 C125 | 6.79 | -1.11 | Probable transmembrane protein of unknown function | 3025 | 2397 | |
THC0290_1841 | phoH | CDS | 2141811:2142761 - | A1044 B344 C102 | 12.93 | 1.06 | Phosphate starvation-inducible protein PhoH | 3061 | 2009 |
THC0290_N_1249 | 3prime | 2163005:2163365 - | A1813 B557 C145 | 8.26 | 1.09 | new transcription segment | 3100 | 3903 | |
THC0290_1864 | CDS | 2163366:2164622 - | A1070 B357 C105 | 10.92 | 1.10 | Major facilitator superfamily (MFS) permease | 3102 | 2041 | |
THC0290_1868 | CDS | 2168095:2168679 - | A1749 B546 C143 | 9.31 | 1.25 | RNA polymerase ECF-type sigma factor | 3109 | 3328 | |
THC0290_1869 | uvrA1 | CDS | 2168946:2171735 + | A1765 B546 C143 | 10.33 | 1.48 | Excinuclease ABC, A subunit UvrA1 | 3111 | 3558 |
THC0290_1874 | pepX2 | CDS | 2177914:2180046 + | A525 B180 C44 | 10.58 | -1.69 | Xaa-Pro dipeptidyl-peptidase precursor | 3122 | 706 |
THC0290_N_1260 | 3prime | 2180084:2180270 + | A1695 B546 C143 | 7.13 | 1.13 | new transcription segment | 3123 | 3105 | |
THC0290_N_1272 | 5prime | 2202131:2202187 - | A1707 B546 C143 | 11.71 | 1.07 | new transcription segment | 3156 | 3128 | |
THC0290_1908 | mutL | CDS | 2217523:2219364 + | A1507 B518 C143 | 11.27 | 1.03 | DNA mismatch repair protein MutL | 3181 | 2725 |
THC0290_1910 | CDS | 2220154:2221044 + | A170 B63 C19 | 10.31 | 1.12 | Rhomboid family protein | 3183 | 211 | |
THC0290_N_1285 | intra | 2221045:2221140 + | A171 B63 C19 | 8.63 | 1.09 | new transcription segment | 3184 | 212 | |
THC0290_N_1288 | 3prime-PT | 2222573:2222733 - | A1665 B542 C143 | 7.86 | 2.01 | new transcription segment | 3189 | 3047 | |
THC0290_1913 | CDS | 2222771:2223451 - | A1768 B546 C143 | 11.40 | 1.25 | Probable transcriptional regulatory protein, Crp/Fnr family | 3190 | 3678 | |
THC0290_N_1290 | intra | 2225939:2225999 + | A700 B199 C52 | 8.21 | -1.02 | new transcription segment | 3192 | 1525 | |
THC0290_1915 | ccoS | CDS | 2226015:2226212 + | A700 B199 C52 | 9.31 | -1.89 | Probable cytochrome cbb3 oxidase maturation protein CcoS | 3193 | 1526 |
THC0290_1916 | CDS | 2226196:2227179 + | A700 B199 C52 | 9.63 | -1.76 | Probable acyl-[acyl-carrier-protein] desaturase | 3194 | 1527 | |
THC0290_N_1291 | intra | 2227180:2227238 + | A700 B199 C52 | 10.01 | -1.84 | new transcription segment | 3195 | 1524 | |
THC0290_1924 | hemN | CDS | 2233612:2234976 - | A701 B199 C52 | 8.29 | -1.36 | Oxygen-independent coproporphyrinogen III oxidase HemN | 3205 | 1529 |
THC0290_1925 | acnA | CDS | 2235143:2237407 - | A218 B81 C25 | 14.18 | 1.32 | Aconitate hydratase | 3206 | 279 |
THC0290_N_1298 | 3prime | 2240124:2240177 - | A297 B110 C31 | 4.97 | -1.26 | new transcription segment | 3211 | 382 | |
THC0290_tRNA_0041 | tRNA | 2267163:2267236 - | A1769 B546 C143 | 11.00 | 1.44 | transfer RNA-Trp | 3237 | 3758 | |
THC0290_1946 | xerC | CDS | 2269424:2270320 - | A1043 B344 C102 | 11.46 | 1.35 | Tyrosine recombinase XerC | 3248 | 2007 |
THC0290_1949 | CDS | 2272035:2272910 - | A1765 B546 C143 | 9.98 | 1.56 | Probable transmembrane protein of unknown function | 3254 | 3555 | |
THC0290_1950 | CDS | 2272914:2273141 - | A1762 B546 C143 | 9.72 | 1.17 | Hypothetical protein | 3255 | 3419 | |
THC0290_N_1320 | intra | 2274529:2274766 - | A1150 B392 C119 | 5.10 | -1.01 | new transcription segment | 3259 | 2183 | |
THC0290_1966 | CDS | 2294705:2295145 + | A527 B180 C44 | 11.36 | -1.60 | Low molecular weight phosphotyrosine protein phosphatase | 3285 | 713 | |
THC0290_1967 | CDS | 2295152:2295868 + | A527 B180 C44 | 10.33 | -1.59 | Probable methyltransferase | 3286 | 714 | |
THC0290_N_1331 | 3prime-PT | 2295401:2295816 - | A1644 B540 C143 | 6.19 | 1.80 | new transcription segment | 3287 | 2991 | |
THC0290_1968 | CDS | 2295865:2296506 - | A1768 B546 C143 | 10.15 | 1.23 | Protein of unknown function | 3288 | 3712 | |
THC0290_N_1333 | 3prime | 2295869:2296343 + | A758 B224 C62 | 7.32 | -1.41 | new transcription segment | 3289 | 1632 | |
THC0290_1971 | CDS | 2298569:2299102 - | A1564 B526 C143 | 9.29 | 1.22 | Probable ribosomal-protein-amino-adic N-acetyltransferase | 3293 | 2830 | |
THC0290_1972 | dapF | CDS | 2299113:2299883 - | A1564 B526 C143 | 11.74 | 1.33 | Diaminopimelate epimerase | 3294 | 2832 |
THC0290_N_1335 | 5prime | 2299884:2300001 - | A1707 B546 C143 | 10.52 | 1.54 | new transcription segment | 3295 | 3129 | |
THC0290_1978 | CDS | 2307042:2307821 + | A522 B180 C44 | 12.62 | -1.07 | Protein of unknown function | 3306 | 701 | |
THC0290_N_1357 | 3prime-PT | 2359706:2360343 - | A563 B183 C44 | 8.28 | 1.05 | new transcription segment | 3377 | 832 | |
THC0290_N_1372 | 3prime | 2396621:2397103 - | A598 B183 C44 | 10.81 | -1.22 | new transcription segment | 3423 | 990 | |
THC0290_N_1375 | 3prime-PT | 2399570:2399806 - | A651 B183 C44 | 8.61 | 1.49 | new transcription segment | 3428 | 1421 | |
THC0290_2100 | CDS | 2419224:2422433 + | A1796 B549 C143 | 13.13 | 2.30 | SusC/RagA family TonB-dependent receptor precursor, Omp121 family | 3470 | 3882 | |
THC0290_2101 | CDS | 2422448:2423926 + | A1796 B549 C143 | 12.39 | 1.23 | SusD/RagB family lipoprotein precursor | 3471 | 3883 | |
THC0290_N_1385 | 3prime | 2423927:2423992 + | A1786 B549 C143 | 5.90 | 1.24 | new transcription segment | 3473 | 3837 | |
THC0290_2102 | CDS | 2423993:2424727 + | A1557 B526 C143 | 12.13 | 1.19 | Probable tRNA/rRNA methyltransferase | 3474 | 2818 | |
THC0290_2103 | CDS | 2424831:2425625 - | A1211 B415 C124 | 10.82 | 1.83 | Probable transmembrane protein of unknown function | 3477 | 2272 | |
THC0290_2104 | CDS | 2425856:2427133 + | A432 B164 C44 | 8.83 | -1.22 | Putative AAA family ATPase | 3479 | 557 | |
THC0290_2110 | CDS | 2431971:2434121 - | A600 B183 C44 | 11.50 | -1.08 | Protein of unknown function precursor, putative S46 family serine protease | 3488 | 1099 | |
THC0290_2111 | CDS | 2434311:2434772 + | A1795 B549 C143 | 8.13 | 1.04 | Protein of unknown function containing LysM domain | 3489 | 3858 | |
THC0290_2130 | fabH1 | CDS | 2452498:2453556 + | A1066 B354 C104 | 11.91 | 1.19 | 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH1 | 3522 | 2036 |
THC0290_N_1414 | 5prime | 2473389:2473464 + | A1749 B546 C143 | 10.77 | 1.16 | new transcription segment | 3549 | 3324 | |
THC0290_2164 | exbD1 | CDS | 2499959:2500573 - | A399 B152 C42 | 14.14 | -1.13 | Biopolymer transport ExbD1 protein | 3584 | 511 |
THC0290_2165 | exbB | CDS | 2500639:2501457 - | A398 B152 C42 | 13.29 | -1.49 | Biopolymer transport ExbB protein | 3586 | 508 |
THC0290_N_1427 | 5prime | 2501458:2501514 - | A395 B151 C42 | 9.70 | -1.88 | new transcription segment | 3587 | 505 | |
THC0290_2168 | pac | CDS | 2504933:2507317 - | A657 B184 C45 | 9.54 | -1.04 | Penicillin G acylase precursor | 3593 | 1429 |
THC0290_N_1437 | 5prime | 2526804:2526891 - | A1422 B492 C141 | 5.48 | 1.71 | new transcription segment | 3619 | 2604 | |
THC0290_N_1440 | 3prime | 2536180:2536241 - | A534 B180 C44 | 6.13 | -1.40 | new transcription segment | 3626 | 728 | |
THC0290_2193 | CDS | 2536242:2537348 - | A538 B180 C44 | 9.82 | -1.56 | Protein of unknown function precursor | 3627 | 736 | |
THC0290_2194 | CDS | 2538052:2540829 + | A538 B180 C44 | 11.18 | -2.35 | Probable TonB-dependent outer membrane receptor precursor | 3628 | 737 | |
THC0290_2249 | ansA | CDS | 2601255:2602283 + | A600 B183 C44 | 9.30 | -1.09 | Asparaginase 1 | 3708 | 1059 |
THC0290_N_1470 | 5prime | 2602284:2602336 + | A496 B175 C44 | 6.67 | -1.55 | new transcription segment | 3709 | 662 | |
THC0290_2255 | bioA | CDS | 2608781:2610052 - | A609 B183 C44 | 10.21 | -1.02 | Adenosylmethionine--8-amino-7-oxononanoate transaminase | 3722 | 1274 |
THC0290_2266 | pepX1 | CDS | 2621923:2624088 - | A607 B183 C44 | 11.19 | -1.86 | Xaa-Pro dipeptidyl-peptidase precursor | 3739 | 1260 |
THC0290_N_1492 | 3prime | 2637955:2638255 - | A120 B50 C18 | 6.74 | -1.09 | new transcription segment | 3763 | 153 | |
THC0290_2295 | pepC | CDS | 2650968:2652155 + | A545 B180 C44 | 12.59 | -1.13 | Bleomycin hydrolase | 3787 | 778 |
THC0290_2296 | CDS | 2652224:2654422 - | A730 B209 C54 | 9.73 | 1.79 | Probable TonB-dependent outer membrane receptor precursor | 3788 | 1596 | |
THC0290_N_1502 | intra | 2654423:2654506 - | A1549 B523 C143 | 10.27 | 1.07 | new transcription segment | 3789 | 2795 | |
THC0290_N_1504 | intra | 2655471:2655533 - | A528 B180 C44 | 9.79 | -1.51 | new transcription segment | 3793 | 716 | |
THC0290_2298 | CDS | 2655534:2656004 - | A528 B180 C44 | 10.53 | -1.47 | Probable transcriptional regulator, AsnC family | 3794 | 715 | |
THC0290_N_1505 | intra | 2656005:2656153 - | A631 B183 C44 | 8.31 | -1.48 | new transcription segment | 3795 | 1364 | |
THC0290_2305 | fabH3 | CDS | 2662409:2663410 - | A600 B183 C44 | 12.93 | -1.12 | 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH3 | 3806 | 1078 |
THC0290_N_1511 | intra | 2663411:2663527 - | A600 B183 C44 | 11.80 | -1.31 | new transcription segment | 3807 | 1058 | |
THC0290_2317 | sufD | CDS | 2672407:2673723 - | A773 B234 C66 | 12.70 | 1.20 | Fe-S assembly protein, SufD | 3826 | 1658 |
THC0290_2318 | sufC | CDS | 2673725:2674474 - | A773 B234 C66 | 13.32 | 1.44 | Fe-S assembly ATPase, SufC | 3827 | 1659 |
THC0290_2319 | sufB | CDS | 2674511:2675959 - | A772 B234 C66 | 13.62 | 1.80 | Fe-S assembly protein, SufB | 3828 | 1657 |
THC0290_N_1519 | intra | 2675960:2676041 - | A1708 B546 C143 | 13.14 | 2.18 | new transcription segment | 3829 | 3132 | |
THC0290_2320 | sufA | CDS | 2676042:2676371 - | A1708 B546 C143 | 13.34 | 2.23 | Scaffold protein for Fe-S assembly, SufA | 3830 | 3131 |
THC0290_N_1520 | 5prime | 2676372:2676436 - | A1709 B546 C143 | 13.27 | 2.05 | new transcription segment | 3831 | 3141 | |
THC0290_2321 | CDS | 2676630:2677490 + | A18 B9 C4 | 9.83 | -2.17 | Putative metal-dependent hydrolase | 3832 | 23 | |
THC0290_2322 | CDS | 2677561:2679165 + | A609 B183 C44 | 12.28 | -1.36 | Probable S8 subtilisin family serine endopeptidase precursor | 3833 | 1277 | |
THC0290_N_1522 | intra | 2679166:2679246 + | A602 B183 C44 | 8.94 | -1.08 | new transcription segment | 3834 | 1206 | |
THC0290_2323 | CDS | 2679247:2681118 + | A609 B183 C44 | 11.59 | -1.50 | Probable M1 family aminopeptidase precursor | 3835 | 1278 | |
THC0290_2324 | CDS | 2681125:2681865 + | A526 B180 C44 | 10.28 | -1.05 | Hypothetical protein | 3836 | 712 | |
THC0290_N_1528 | 3prime | 2689772:2690654 - | A1779 B546 C143 | 8.00 | 1.36 | new transcription segment | 3849 | 3814 | |
THC0290_2340 | CDS | 2707725:2708981 - | A1710 B546 C143 | 10.46 | 1.11 | Probable ABC-type transport system, permease component | 3869 | 3143 | |
THC0290_2343 | mreC | CDS | 2711803:2712591 + | A600 B183 C44 | 10.51 | -1.10 | Rod shape-determining protein MreC | 3873 | 1060 |
THC0290_2345 | pbpA | CDS | 2713087:2715027 + | A561 B183 C44 | 10.14 | -1.06 | Penicillin-binding protein 2. Peptidoglycan glycosyltransferase | 3875 | 826 |
THC0290_2357 | CDS | 2727885:2728442 - | A545 B180 C44 | 10.07 | -1.27 | Probable lipoprotein precursor. Putative lipopolysaccharide assembly protein LptC | 3895 | 776 | |
THC0290_2358 | CDS | 2728448:2729662 - | A545 B180 C44 | 10.74 | -1.12 | Protein of unknown function precursor, putative outer membrane protein | 3896 | 780 | |
THC0290_tRNA_0049 | tRNA | 2730483:2730558 + | A1769 B546 C143 | 8.23 | 1.15 | transfer RNA-Phe | 3898 | 3757 | |
THC0290_N_1550 | 3prime | 2730564:2730708 - | A1762 B546 C143 | 7.68 | 1.90 | new transcription segment | 3899 | 3429 | |
THC0290_2361 | smf | CDS | 2731266:2732366 - | A526 B180 C44 | 7.61 | -1.19 | Protein Smf of unknown function | 3902 | 710 |
THC0290_2378 | gene | 2750023:2750625 - | A1490 B510 C143 | 9.00 | 1.12 | Truncated TonB-dependent outer membrane receptor | 3935 | 2697 | |
THC0290_2385 | CDS | 2756669:2758039 + | A1795 B549 C143 | 9.76 | 2.74 | RCC1 (Regulator of Chromosome Condensation) repeat domain protein precursor | 3947 | 3862 | |
THC0290_N_1572 | 3prime | 2758040:2758319 + | A1795 B549 C143 | 8.27 | 2.56 | new transcription segment | 3949 | 3863 |