Differential expression: Fœtal Calf Serum supplementation [T2-FCS.vs.T2]

Differentially expressed genes in cells grown in TYES broth supplemented or not with 5% fœtal calf serum at 18°C 200 rpm (OD600nm=1.3).

List of differentially expressed genomic elements (CDS and newly identified RNA elements).
Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.

Reference samples: T2_a, T2_c
Test samples: T2-FCS_a, T2-FCS_b

Locus Tag Name (v2) Feature type Location Clusters Base Expr. Delta Expr. Annotation Chromosome order Clusters order
THC0290_0182 CDS 230123:231112 - A1083 B365 C107 13.01 1.17 Probable cell surface protein (Leucine-rich repeat protein) precursor 313 2056
THC0290_0184 CDS 232062:233117 - A1083 B365 C107 12.64 1.46 Probable cell surface protein (Leucine-rich repeat protein) precursor 315 2058
THC0290_0185 CDS 233132:234121 - A1088 B365 C107 12.75 1.60 Probable cell surface protein (Leucine-rich repeat protein) precursor 316 2088
THC0290_0186 CDS 234136:235122 - A1088 B365 C107 12.51 1.42 Probable cell surface protein (Leucine-rich repeat protein) precursor 317 2085
THC0290_0237 fpp1 CDS 288547:291963 - A1062 B352 C104 10.65 -1.92 Psychrophilic metalloprotease Fpp1 precursor 403 2030
THC0290_N_0216 3prime 355371:355427 + A1608 B535 C143 9.04 1.16 new transcription segment 497 2896
THC0290_0446 CDS 542293:542667 + A1581 B531 C143 10.85 1.14 Protein of unknown function 743 2853
THC0290_0681 CDS 817138:819144 + A1674 B543 C143 10.30 -1.65 Probable TonB-dependent outer membrane receptor precursor 1148 3071
THC0290_0682 CDS 819184:819525 + A1674 B543 C143 10.51 -1.18 Protein of unknown function 1149 3069
THC0290_0922 CDS 1082167:1082580 + A1649 B541 C143 9.15 -1.02 Protein of unknown function 1549 3010
THC0290_0923 CDS 1082679:1084841 + A207 B76 C24 9.73 -3.60 Probable TonB-dependent outer membrane receptor precursor 1550 265
THC0290_N_0656 intra 1084910:1084987 + A207 B76 C24 8.34 -3.22 new transcription segment 1551 264
THC0290_0924 CDS 1084988:1086520 + A207 B76 C24 8.98 -3.01 Probable transmembrane protein of unknown function 1552 266
THC0290_0931 CDS 1092634:1095516 + A1796 B549 C143 10.39 -1.68 Collagenase precursor 1565 3878
THC0290_1015 CDS 1195821:1196102 + A1628 B539 C143 5.31 -1.28 Protein of unknown function 1711 2940
THC0290_1055 CDS 1233132:1235285 + A556 B183 C44 8.85 -2.59 Probable outer membrane protein precursor 1770 805
THC0290_1056 CDS 1235407:1236027 + A556 B183 C44 11.05 -2.93 Protein of unknown function 1771 806
THC0290_N_0747 intra 1236028:1236085 + A556 B183 C44 10.16 -2.75 new transcription segment 1772 804
THC0290_1057 CDS 1236086:1237453 + A556 B183 C44 11.52 -2.49 Membrane protein containing an internal histidine kinase domain 1773 810
THC0290_1058 CDS 1237456:1237776 + A556 B183 C44 10.50 -2.32 Protein of unknown function 1774 811
THC0290_1059 CDS 1237798:1238103 + A556 B183 C44 11.27 -2.11 Protein of unknown function 1775 809
THC0290_1060 CDS 1238111:1238461 + A556 B183 C44 11.09 -1.95 Protein of unknown function 1776 812
THC0290_N_0748 intra 1238462:1238530 + A556 B183 C44 10.02 -2.02 new transcription segment 1777 807
THC0290_1061 CDS 1238531:1239292 + A556 B183 C44 9.93 -1.88 Two-component system response regulatory protein, LytTR family 1778 808
THC0290_N_0898 3prime 1626364:1626511 - A1565 B527 C143 5.57 -1.13 new transcription segment 2287 2833
THC0290_1407 CDS 1626512:1627642 - A1054 B347 C103 8.70 -1.70 Probable membrane fusion efflux lipoprotein precursor 2289 2020
THC0290_1408 CDS 1627716:1632059 - A1054 B347 C103 8.45 -2.06 Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein 2290 2021
THC0290_N_0900 intra 1632060:1632186 - A1054 B347 C103 7.72 -1.25 new transcription segment 2291 2019
THC0290_1630 CDS 1892517:1893479 - A206 B76 C24 12.51 -3.59 Protein of unknown function precursor 2697 262
THC0290_1631 CDS 1893486:1894529 - A206 B76 C24 13.28 -3.49 Probable cytochrome c peroxidase precursor 2698 263
THC0290_N_1090 3prime-PT 1894530:1894615 - A206 B76 C24 10.23 -3.50 new transcription segment 2699 261
THC0290_N_1092 3prime 1894616:1894799 - A206 B76 C24 15.00 -3.45 new transcription segment 2701 258
THC0290_1632 CDS 1894800:1895606 - A206 B76 C24 14.28 -3.42 Probable lipoprotein precursor 2702 259
THC0290_N_1093 intra 1895607:1895729 - A206 B76 C24 13.16 -3.66 new transcription segment 2703 260
THC0290_1797 CDS 2082392:2083183 - A1088 B365 C107 12.17 1.16 Protein of unknown function precursor 2992 2090
THC0290_1798 CDS 2083190:2083714 - A1088 B365 C107 12.45 1.07 Protein of unknown function containing ankyrin repeat signature 2993 2103
THC0290_1800 CDS 2084766:2085770 - A1088 B365 C107 12.89 1.09 Protein of unknown function 2995 2105
THC0290_1801 CDS 2085799:2087151 - A1088 B365 C107 11.79 1.16 Protein of unknown function 2996 2102
THC0290_1802 CDS 2087189:2087410 - A1088 B365 C107 12.91 1.24 Hypothetical protein 2997 2100
THC0290_1803 apbE CDS 2087394:2088356 - A1088 B365 C107 12.04 1.04 Membrane-associated protein involved in thiamine biosynthesis 2998 2101
THC0290_1804 CDS 2088365:2088802 - A1088 B365 C107 11.66 1.19 Thioredoxin family protein 2999 2081
THC0290_1813 CDS 2097360:2097836 - A1088 B365 C107 13.10 1.06 Probable transmembrane protein of unknown function 3013 2086
THC0290_1814 CDS 2097857:2099929 - A1088 B365 C107 11.90 1.25 Probable TonB-dependent outer membrane receptor precursor 3014 2082
THC0290_N_1215 3prime 2101286:2101337 + A1717 B546 C143 6.45 1.55 new transcription segment 3017 3163
THC0290_1819 CDS 2107930:2110392 + A777 B236 C67 11.25 -1.33 Probable TonB-dependent outer membrane receptor precursor 3022 1663
THC0290_2030 CDS 2357857:2358465 + A1088 B365 C107 9.89 1.39 Hypothetical lipoprotein precursor 3373 2107
THC0290_2031 CDS 2358462:2359160 + A1088 B365 C107 10.15 1.33 Hypothetical protein precursor 3374 2099
THC0290_N_1356 3prime 2359161:2359474 + A1087 B365 C107 8.74 1.10 new transcription segment 3375 2079
THC0290_N_1526 3prime 2682363:2682437 - A680 B190 C47 10.55 -2.01 new transcription segment 3842 1471
THC0290_2326 CDS 2682438:2685902 - A681 B190 C47 12.29 -1.66 Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein 3843 1473
THC0290_2327 CDS 2685933:2687075 - A681 B190 C47 12.74 -1.54 Probable membrane fusion efflux lipoprotein precursor 3844 1474
THC0290_2328 CDS 2687094:2688437 - A681 B190 C47 12.37 -1.56 Probable outer membrane efflux protein precursor 3845 1472
THC0290_2329 CDS 2688448:2689041 - A679 B190 C47 10.91 -1.40 Probable transcriptional regulator, TetR family 3846 1470
THC0290_2377 CDS 2748714:2749862 - A1489 B510 C143 6.93 1.06 Probable transmembrane protein of unknown function 3933 2694