Differential expression: Growth on solid low nutrient medium [TYESA-0.5.vs.TYESA]
Differentially expressed genes in bacterial colonies grown in TYES-agar containing 1/2 nutrients concentration relative to standard concentration after 4 days at 18°C.
List of differentially expressed genomic elements (CDS and newly identified RNA elements).Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.
Reference samples: TYESA_a, TYESA_b
Test samples: TYESA-0.5_a, TYESA-0.5_b
Locus Tag | Name (v2) | Feature type | Location | Clusters | Base Expr. | Delta Expr. | Annotation | Chromosome order | Clusters order |
---|---|---|---|---|---|---|---|---|---|
THC0290_0001 | rnr | CDS | 554:2728 + | A1753 B546 C143 | 12.97 | 1.47 | Ribonuclease R | 1 | 3345 |
THC0290_0006 | CDS | 7285:7614 + | A1751 B546 C143 | 15.46 | 1.06 | Hypothetical protein precursor | 11 | 3336 | |
THC0290_N_0007 | 3prime | 8197:8243 - | A1309 B448 C131 | 5.82 | 3.78 | new transcription segment | 14 | 2451 | |
THC0290_0025 | sprB | CDS | 32571:43136 + | A242 B86 C26 | 13.08 | -1.00 | Putative adhesin precursor SprB (modular protein) | 47 | 315 |
THC0290_N_0024 | intra | 43137:43182 + | A744 B215 C56 | 5.15 | -2.33 | new transcription segment | 48 | 1618 | |
THC0290_0029 | elaA | CDS | 47729:48178 + | A1768 B546 C143 | 10.67 | 1.68 | ElaA protein | 55 | 3677 |
THC0290_N_0029 | Rfp3 | indep | 49141:49425 + | A1768 B546 C143 | 10.62 | 2.30 | new transcription segment | 58 | 3650 |
THC0290_N_0030 | 5prime | 49569:49619 + | A1713 B546 C143 | 11.47 | 1.05 | new transcription segment | 59 | 3152 | |
THC0290_N_0031 | 5prime | 51080:51148 + | A1543 B522 C143 | 9.38 | 1.33 | new transcription segment | 61 | 2786 | |
THC0290_N_0037 | Rfp4 | indep | 64013:64179 - | A699 B199 C52 | 11.74 | -2.54 | new transcription segment | 77 | 1517 |
THC0290_0041 | CDS | 64242:64637 - | A700 B199 C52 | 10.26 | -3.68 | Cytochrome c551/c552 family protein | 78 | 1523 | |
THC0290_N_0039 | Rfp5 | indep | 69429:69507 + | A1768 B546 C143 | 9.72 | 2.33 | new transcription segment | 86 | 3616 |
THC0290_0048 | hemE | CDS | 69952:70974 - | A588 B183 C44 | 8.45 | -1.46 | Uroporphyrinogen decarboxylase | 87 | 931 |
THC0290_N_0044 | 3prime | 78908:78989 + | A177 B64 C20 | 4.80 | -1.83 | new transcription segment | 100 | 221 | |
THC0290_0060 | yqiW | CDS | 81475:81885 - | A1768 B546 C143 | 14.72 | 1.15 | Protein of unknown function YqiW | 107 | 3611 |
THC0290_0063 | CDS | 85173:85406 + | A1768 B546 C143 | 13.94 | 2.40 | Hypothetical protein | 113 | 3648 | |
THC0290_0066 | CDS | 87514:87873 + | A125 B52 C18 | 5.68 | -2.81 | Protein of unknown function | 117 | 158 | |
THC0290_0071 | CDS | 93117:94103 - | A1052 B346 C102 | 11.44 | 1.31 | Putative phosphoglycerate dehydrogenase | 124 | 2017 | |
THC0290_N_0056 | 5prime | 94104:94163 - | A1430 B497 C142 | 10.59 | 2.37 | new transcription segment | 125 | 2613 | |
THC0290_0077 | serS | CDS | 99742:101013 - | A484 B172 C44 | 12.14 | -1.22 | Serine--tRNA ligase | 136 | 645 |
THC0290_N_0061 | intra | 101014:101224 - | A484 B172 C44 | 11.87 | -1.18 | new transcription segment | 137 | 646 | |
THC0290_0078 | CDS | 101225:102457 - | A484 B172 C44 | 12.59 | -1.10 | Protein of unknown function precursor | 138 | 643 | |
THC0290_0079 | CDS | 102454:102894 - | A484 B172 C44 | 13.03 | -1.23 | Protein of unknown function | 139 | 644 | |
THC0290_0080 | CDS | 102896:104074 - | A484 B172 C44 | 13.10 | -1.26 | Probable lipoprotein precursor | 140 | 642 | |
THC0290_0081 | mntH | CDS | 104165:106036 + | A1089 B366 C107 | 12.51 | -1.15 | Probable manganese transport protein mntH | 141 | 2108 |
THC0290_tRNA_0002 | tRNA | 109057:109130 - | A1769 B546 C143 | 13.52 | 2.71 | transfer RNA-Asn | 149 | 3770 | |
THC0290_N_0068 | Rfp7 | indep | 113267:113949 + | A1747 B546 C143 | 9.72 | 1.45 | new transcription segment | 155 | 3296 |
THC0290_N_0070 | 3prime | 115149:115324 + | A1825 B559 C145 | 5.79 | 2.16 | new transcription segment | 159 | 3918 | |
THC0290_0093 | feoA | CDS | 121549:121791 + | A1494 B512 C143 | 12.72 | 1.37 | Ferrous iron transport protein A | 163 | 2709 |
THC0290_N_0075 | Rfp8 | indep | 129929:130108 - | A1768 B546 C143 | 8.45 | 3.49 | new transcription segment | 175 | 3608 |
THC0290_0110 | CDS | 140658:140933 - | A1768 B546 C143 | 13.39 | 2.42 | Putative plasmid stabilization system protein | 189 | 3633 | |
THC0290_0111 | CDS | 140930:141169 - | A1768 B546 C143 | 13.95 | 3.08 | Hypothetical protein | 190 | 3634 | |
THC0290_N_0088 | intra | 157872:157951 + | A72 B35 C14 | 7.95 | 1.56 | new transcription segment | 209 | 83 | |
THC0290_0126 | CDS | 158144:158260 + | A71 B35 C14 | 8.75 | 1.17 | Hypothetical protein | 211 | 82 | |
THC0290_N_0091 | 3prime | 162010:162767 + | A1820 B557 C145 | 5.85 | -3.19 | new transcription segment | 218 | 3912 | |
THC0290_N_0093 | 5prime | 163655:163724 - | A553 B182 C44 | 6.00 | -4.29 | new transcription segment | 223 | 798 | |
THC0290_0133 | CDS | 163777:164133 - | A304 B113 C32 | 9.67 | 2.29 | Protein of unknown function | 224 | 389 | |
THC0290_0134 | CDS | 164278:164808 + | A1448 B502 C142 | 10.08 | 2.24 | Probable transmembrane protein of unknown function | 227 | 2637 | |
THC0290_N_0106 | 3prime | 181329:181404 + | A1519 B521 C143 | 9.12 | 3.23 | new transcription segment | 251 | 2751 | |
THC0290_0150 | nadD | CDS | 183908:184489 - | A74 B35 C14 | 10.57 | 1.89 | Nicotinate-nucleotide adenylyltransferase | 256 | 85 |
THC0290_tRNA_0004 | tRNA | 191804:191888 - | A1768 B546 C143 | 11.61 | 2.47 | transfer RNA-Leu | 267 | 3657 | |
THC0290_0157 | CDS | 194650:195750 + | A1765 B546 C143 | 11.53 | 1.66 | Probable transmembrane protein of unknown function | 272 | 3507 | |
THC0290_N_0131 | 3prime | 208552:208636 - | A958 B303 C83 | 7.03 | 2.06 | new transcription segment | 289 | 1898 | |
THC0290_0166 | CDS | 210086:211081 + | A1768 B546 C143 | 9.86 | 1.06 | Protein of unknown function | 291 | 3717 | |
THC0290_0169 | CDS | 212865:213590 - | A544 B180 C44 | 10.40 | 1.13 | Glycosyl transferase, group 2 family protein | 296 | 766 | |
THC0290_0173 | CDS | 217635:218969 - | A1083 B365 C107 | 15.08 | -1.12 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 301 | 2069 | |
THC0290_0174 | CDS | 219283:220551 - | A1083 B365 C107 | 14.83 | -1.33 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 302 | 2072 | |
THC0290_0175 | CDS | 220567:221559 - | A1083 B365 C107 | 14.95 | -1.39 | Probable cell surface protein (Leucine-rich repeat protein) | 303 | 2073 | |
THC0290_0176 | CDS | 221575:222702 - | A1083 B365 C107 | 14.84 | -1.18 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 304 | 2070 | |
THC0290_0182 | CDS | 230123:231112 - | A1083 B365 C107 | 12.57 | -3.16 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 313 | 2056 | |
THC0290_0183 | CDS | 231127:232047 - | A1083 B365 C107 | 14.19 | -2.56 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 314 | 2057 | |
THC0290_0184 | CDS | 232062:233117 - | A1083 B365 C107 | 12.76 | -2.47 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 315 | 2058 | |
THC0290_0185 | CDS | 233132:234121 - | A1088 B365 C107 | 12.60 | -3.10 | Probable cell surface protein (Leucine-rich repeat protein) precursor | 316 | 2088 | |
THC0290_0210 | pykA | CDS | 258953:260383 + | A833 B252 C69 | 12.17 | -1.04 | Pyruvate kinase | 360 | 1740 |
THC0290_N_0168 | 5prime | 264212:264278 - | A890 B276 C76 | 10.30 | 1.42 | new transcription segment | 368 | 1818 | |
THC0290_0218 | CDS | 266397:266870 - | A337 B126 C35 | 9.45 | 1.57 | Protein of unknown function | 372 | 437 | |
THC0290_N_0169 | Rfp17 | indep | 266572:266801 + | A1747 B546 C143 | 10.34 | 1.86 | new transcription segment | 373 | 3298 |
THC0290_0235 | CDS | 286622:287854 + | A1273 B425 C125 | 10.61 | 1.16 | Probable M23/M37 family peptidase | 401 | 2411 | |
THC0290_0245 | queA | CDS | 300280:301329 - | A1745 B546 C143 | 14.06 | 1.15 | S-adenosylmethionine:tRNA-ribosyltransferase- isomerase | 418 | 3230 |
THC0290_N_0187 | 5prime | 301330:301388 - | A1745 B546 C143 | 13.93 | 1.90 | new transcription segment | 419 | 3231 | |
THC0290_N_0190 | 5prime | 304377:304524 - | A357 B136 C39 | 9.17 | -1.00 | new transcription segment | 427 | 458 | |
THC0290_0263 | metY | CDS | 319731:321023 - | A726 B207 C54 | 7.02 | 2.35 | Probable O-acetylhomoserine aminocarboxypropyltransferase | 447 | 1585 |
THC0290_N_0198 | Rfp20 | indep | 321293:321392 - | A1435 B498 C142 | 7.10 | 3.53 | new transcription segment | 448 | 2619 |
THC0290_0266 | CDS | 323966:324199 - | A1463 B506 C142 | 9.18 | 2.25 | Transcriptional regulator, XRE family | 454 | 2657 | |
THC0290_0276 | CDS | 334046:334363 - | A1709 B546 C143 | 15.60 | 1.79 | Thioredoxin family protein | 468 | 3133 | |
THC0290_0282 | CDS | 337611:338546 + | A991 B313 C85 | 5.36 | -2.80 | Probable outer membrane protein precursor | 476 | 1946 | |
THC0290_N_0210 | 5prime | 344988:345117 - | A855 B257 C70 | 12.83 | 2.42 | new transcription segment | 485 | 1778 | |
THC0290_miscRNA_0001 | misc_RNA | 345053:345113 - | A855 B257 C70 | 12.75 | 2.31 | SAM-II long loop | 486 | 1777 | |
THC0290_0292 | CDS | 351317:352102 - | A377 B143 C41 | 11.18 | 1.14 | Protein of unknown function | 493 | 482 | |
THC0290_N_0216 | 3prime | 355371:355427 + | A1608 B535 C143 | 10.31 | 2.56 | new transcription segment | 497 | 2896 | |
THC0290_0297 | CDS | 356020:356607 + | A1243 B419 C125 | 10.05 | 1.03 | Protein of unknown function | 500 | 2328 | |
THC0290_0305 | CDS | 371748:372044 + | A1699 B546 C143 | 12.58 | 2.45 | Thioredoxin family protein | 511 | 3113 | |
THC0290_0310 | CDS | 376525:379755 - | A939 B296 C82 | 11.76 | -1.36 | Probable transmembrane protein of unknown function | 518 | 1876 | |
THC0290_N_0227 | 3prime-PT | 380006:380541 + | A1168 B401 C121 | 6.11 | 3.05 | new transcription segment | 521 | 2203 | |
THC0290_0312 | yggG | CDS | 381240:382067 + | A1762 B546 C143 | 14.46 | 1.12 | Putative secreted M48 family metalloprotease YggG precursor | 523 | 3398 |
THC0290_0319 | CDS | 391228:391704 + | A1404 B483 C139 | 9.47 | 1.02 | Hypothetical protein | 534 | 2578 | |
THC0290_0340 | ubiE | CDS | 417706:418437 - | A68 B33 C14 | 10.53 | 1.60 | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE | 565 | 78 |
THC0290_0343 | gene | 420014:422260 - | A373 B141 C39 | 6.55 | 2.11 | Protein of unknown function precursor (fragment) | 570 | 477 | |
THC0290_N_0259 | 5prime | 437958:438171 - | A1768 B546 C143 | 11.99 | 1.51 | new transcription segment | 590 | 3609 | |
THC0290_0354 | rpbA | CDS | 438303:438704 - | A971 B307 C84 | 14.85 | 1.83 | Putative RNA-binding protein RbpA | 591 | 1918 |
THC0290_N_0263 | 3prime-PT | 441466:441936 - | A1760 B546 C143 | 9.67 | 1.07 | new transcription segment | 598 | 3375 | |
THC0290_N_0267 | 5prime | 446871:447017 + | A1762 B546 C143 | 12.17 | 1.36 | new transcription segment | 607 | 3396 | |
THC0290_N_0269 | 3prime-PT | 448689:448837 - | A1795 B549 C143 | 12.64 | 2.03 | new transcription segment | 612 | 3859 | |
THC0290_0370 | phoP | CDS | 453885:454571 + | A1767 B546 C143 | 11.60 | 1.67 | Two-component system response regulatory protein involved in phosphate regulation | 619 | 3567 |
THC0290_0392 | CDS | 477872:478558 + | A1711 B546 C143 | 10.29 | 1.07 | Protein of unknown function precursor | 649 | 3148 | |
THC0290_0395 | CDS | 481952:482293 - | A1413 B488 C140 | 4.90 | 1.90 | Hypothetical protein | 655 | 2588 | |
THC0290_tRNA_0008 | tRNA | 483382:483469 - | A1769 B546 C143 | 13.00 | 2.36 | transfer RNA-Leu | 658 | 3763 | |
THC0290_N_0292 | 3prime | 493173:493641 - | A196 B70 C21 | 4.87 | -1.61 | new transcription segment | 669 | 243 | |
THC0290_0404 | CDS | 494527:495138 + | A76 B35 C14 | 9.16 | 1.55 | Protein of unknown function | 673 | 87 | |
THC0290_N_0298 | 3prime-PT | 500352:500565 - | A1760 B546 C143 | 9.63 | 1.94 | new transcription segment | 682 | 3376 | |
THC0290_0411 | CDS | 502074:502397 - | A386 B147 C41 | 8.13 | 1.14 | Hypothetical protein precursor | 689 | 494 | |
THC0290_0412 | CDS | 502402:502551 - | A386 B147 C41 | 8.95 | 2.23 | Hypothetical protein | 690 | 495 | |
THC0290_0418 | apaG | CDS | 509450:509836 - | A1702 B546 C143 | 13.91 | 2.68 | Protein ApaG | 700 | 3120 |
THC0290_0427 | CDS | 519196:519870 - | A1719 B546 C143 | 12.99 | 2.44 | Probable transcriptional regulator, TetR family | 710 | 3166 | |
THC0290_miscRNA_0002 | misc_RNA | 524890:524985 + | A1765 B546 C143 | 12.39 | 2.18 | TPP riboswitch [THI element] | 717 | 3484 | |
THC0290_N_0312 | intra | 524986:525051 + | A729 B209 C54 | 12.21 | 1.89 | new transcription segment | 718 | 1595 | |
THC0290_0431 | thiS | CDS | 525052:525258 + | A730 B209 C54 | 10.22 | 1.83 | Thiamine biosynthesis protein ThiS | 719 | 1598 |
THC0290_0436 | thiG | CDS | 529175:529945 + | A728 B209 C54 | 6.59 | -1.03 | Thiazole biosynthesis protein ThiG | 726 | 1594 |
THC0290_0438 | thiF | CDS | 531214:531924 + | A728 B209 C54 | 5.60 | -1.72 | Molybdopterin and thiamine biosynthesis protein | 729 | 1591 |
THC0290_0439 | pyrH | CDS | 531998:532705 + | A302 B113 C32 | 12.41 | 1.59 | UMP kinase | 730 | 387 |
THC0290_N_0318 | intra | 533368:533474 + | A1697 B546 C143 | 10.88 | 2.35 | new transcription segment | 732 | 3108 | |
THC0290_0444 | CDS | 537060:539312 + | A274 B100 C28 | 5.31 | -2.08 | Probable outer membrane protein precursor | 739 | 357 | |
THC0290_0448 | CDS | 543236:544480 - | A1123 B375 C109 | 10.10 | -1.12 | Major facilitator superfamily (MFS) permease | 745 | 2153 | |
THC0290_0456 | CDS | 553650:554273 - | A702 B199 C52 | 9.73 | -1.89 | Putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer | 757 | 1530 | |
THC0290_N_0334 | 5prime | 561697:561746 - | A1548 B523 C143 | 6.14 | 4.32 | new transcription segment | 769 | 2792 | |
THC0290_0465 | CDS | 563356:563559 + | A1753 B546 C143 | 14.17 | 1.44 | Hypothetical protein | 772 | 3354 | |
THC0290_0470 | CDS | 567208:567639 + | A1768 B546 C143 | 14.32 | 2.10 | Protein of unknown function | 783 | 3644 | |
THC0290_tRNA_0011 | tRNA | 576781:576857 + | A762 B226 C62 | 14.70 | 1.50 | transfer RNA-Ala | 795 | 1637 | |
THC0290_0477 | gene | 581578:581844 - | A1768 B546 C143 | 8.48 | 3.34 | Truncated transposase IS256 family, N-terminal region | 802 | 3618 | |
THC0290_0482 | CDS | 586087:587670 + | A1765 B546 C143 | 11.67 | 1.60 | Transposase IS1182 family | 809 | 3526 | |
THC0290_N_0353 | 5prime | 589527:589618 - | A1768 B546 C143 | 13.74 | 1.60 | new transcription segment | 813 | 3613 | |
THC0290_0499 | CDS | 604918:605220 + | A1389 B477 C139 | 4.58 | -1.00 | Hypothetical protein | 835 | 2561 | |
THC0290_N_0362 | 5prime | 608106:608358 - | A1746 B546 C143 | 10.22 | 1.06 | new transcription segment | 838 | 3247 | |
THC0290_N_0365 | 5prime | 612761:612929 + | A1762 B546 C143 | 11.22 | 1.94 | new transcription segment | 844 | 3416 | |
THC0290_0506 | CDS | 613962:614243 + | A1415 B488 C140 | 6.07 | 2.99 | Protein of unknown function | 847 | 2590 | |
THC0290_0508 | CDS | 614830:615714 - | A1747 B546 C143 | 13.50 | 1.07 | Transposase IS982 family | 850 | 3255 | |
THC0290_N_0368 | repeated_region | 615707:616002 + | A1768 B546 C143 | 10.78 | 1.84 | new transcription segment | 851 | 3621 | |
THC0290_0509 | gene | 616003:617439 + | A1253 B419 C125 | 8.09 | 1.34 | Truncated protein of unknown function, C-terminal region | 852 | 2376 | |
THC0290_N_0375 | repeated_region | 634732:634818 + | A1837 B563 C145 | 5.19 | 2.30 | new transcription segment | 868 | 3930 | |
THC0290_0519 | CDS | 634807:635154 - | A1765 B546 C143 | 12.26 | 1.04 | Conserved protein of unknown function | 869 | 3504 | |
THC0290_0520 | CDS | 635151:635951 - | A1765 B546 C143 | 12.59 | 1.74 | Probable transcriptional regulator | 870 | 3505 | |
THC0290_0526 | CDS | 642217:643776 + | A1765 B546 C143 | 11.51 | 1.52 | Transposase IS1182 family | 878 | 3529 | |
THC0290_N_0390 | Rfp30 | indep | 658610:658815 + | A1762 B546 C143 | 11.77 | 2.36 | new transcription segment | 906 | 3412 |
THC0290_0544 | CDS | 662247:663131 + | A1747 B546 C143 | 13.44 | 1.14 | Transposase IS982 family | 913 | 3257 | |
THC0290_0545 | CDS | 663927:664523 - | A1739 B546 C143 | 6.11 | 2.41 | Hypothetical protein | 914 | 3214 | |
THC0290_N_0403 | intra | 681237:681325 - | A168 B62 C19 | 7.46 | -2.79 | new transcription segment | 937 | 209 | |
THC0290_0560 | CDS | 681664:682242 - | A1210 B415 C124 | 9.11 | -1.63 | Protein of unknown function | 939 | 2270 | |
THC0290_0594 | CDS | 729775:729990 + | A599 B183 C44 | 8.31 | -1.11 | Conserved protein of unknown function | 1002 | 1021 | |
THC0290_0601 | CDS | 737937:739331 + | A1699 B546 C143 | 9.62 | 1.83 | Probable lipoprotein precursor | 1014 | 3114 | |
THC0290_0605 | CDS | 740986:741660 - | A1691 B546 C143 | 11.16 | 1.02 | Protein of unknown function | 1021 | 3099 | |
THC0290_0611 | CDS | 745511:745864 - | A1762 B546 C143 | 14.50 | 1.25 | Protein of unknown function | 1029 | 3392 | |
THC0290_0616 | murI | CDS | 751461:752240 - | A25 B13 C6 | 9.45 | 1.50 | Glutamate racemase | 1039 | 31 |
THC0290_N_0452 | 5prime | 759692:759919 - | A1768 B546 C143 | 11.74 | 1.76 | new transcription segment | 1050 | 3636 | |
THC0290_0632 | CDS | 767506:767874 + | A1745 B546 C143 | 13.82 | 2.71 | Putative Sec-independent protein translocase (twin-arginine translocation protein) | 1068 | 3239 | |
THC0290_0637 | CDS | 771307:772284 + | A1448 B502 C142 | 10.53 | 1.29 | Polyprenyl synthetase | 1077 | 2636 | |
THC0290_0642 | CDS | 776332:777606 + | A1767 B546 C143 | 10.71 | 1.02 | Protein of unknown function precursor | 1082 | 3568 | |
THC0290_N_0466 | 5prime | 777700:777762 + | A553 B182 C44 | 5.55 | -3.20 | new transcription segment | 1083 | 799 | |
THC0290_N_0472 | 3prime | 782817:782865 + | A1354 B468 C136 | 6.29 | -1.70 | new transcription segment | 1095 | 2513 | |
THC0290_N_0474 | intra | 789765:789827 + | A465 B169 C44 | 5.75 | -3.58 | new transcription segment | 1104 | 607 | |
THC0290_0679 | CDS | 816190:816630 + | A85 B40 C15 | 5.70 | -1.95 | Probable transmembrane protein of unknown function | 1145 | 101 | |
THC0290_0692 | CDS | 826788:828029 - | A1747 B546 C143 | 10.87 | 1.45 | Probable ABC-type transport system, permease component | 1162 | 3294 | |
THC0290_0696 | aroQ | CDS | 831952:832365 + | A1592 B534 C143 | 10.49 | 1.22 | 3-dehydroquinate dehydratase | 1171 | 2865 |
THC0290_0702 | CDS | 839661:839945 - | A1709 B546 C143 | 12.36 | 1.07 | Hypothetical protein | 1182 | 3134 | |
THC0290_N_0510 | Rfp36 | indep | 840044:840245 - | A1244 B419 C125 | 8.50 | 1.10 | new transcription segment | 1183 | 2343 |
THC0290_0707 | CDS | 844456:845016 + | A1762 B546 C143 | 13.57 | 1.59 | Putative transcriptional regulator | 1190 | 3410 | |
THC0290_N_0517 | 3prime | 845017:845453 + | A1643 B540 C143 | 9.57 | 1.10 | new transcription segment | 1193 | 2986 | |
THC0290_0721 | rmuC | CDS | 857058:858404 + | A1473 B507 C142 | 10.38 | 1.05 | DNA recombination protein RmuC | 1213 | 2670 |
THC0290_0734 | miaB | CDS | 870961:872406 - | A1747 B546 C143 | 12.77 | 1.53 | Probable TRNA-i(6)A37 modification enzyme MiaB | 1237 | 3292 |
THC0290_0745 | CDS | 884948:885376 - | A1768 B546 C143 | 11.99 | 1.92 | Protein of unknown function | 1254 | 3679 | |
THC0290_N_0545 | 3prime | 887358:887776 + | A574 B183 C44 | 4.67 | -1.53 | new transcription segment | 1258 | 850 | |
THC0290_0753 | CDS | 895795:896361 + | A1459 B505 C142 | 11.53 | 1.20 | Protein of unknown function | 1276 | 2653 | |
THC0290_N_0554 | intra | 896362:896546 + | A1373 B472 C137 | 9.92 | -1.18 | new transcription segment | 1277 | 2540 | |
THC0290_N_0556 | 5prime | 900417:900873 + | A1604 B535 C143 | 12.42 | 1.48 | new transcription segment | 1281 | 2891 | |
THC0290_0760 | CDS | 906571:907191 - | A77 B35 C14 | 8.81 | 1.16 | Protein of unknown function | 1290 | 89 | |
THC0290_0775 | CDS | 926006:926245 + | A1768 B546 C143 | 11.84 | 2.77 | Hypothetical protein | 1317 | 3661 | |
THC0290_0782 | CDS | 930615:931109 - | A1696 B546 C143 | 10.44 | 1.11 | RNA polymerase ECF-type sigma factor | 1328 | 3106 | |
THC0290_0788 | CDS | 938186:938767 + | A1795 B549 C143 | 11.83 | 1.64 | Protein of unknown function precursor | 1337 | 3853 | |
THC0290_0793 | CDS | 943571:944119 - | A1088 B365 C107 | 11.72 | -1.44 | Probable transmembrane protein of unknown function | 1347 | 2094 | |
THC0290_0794 | fhuA | CDS | 944125:946380 - | A1088 B365 C107 | 12.62 | -1.38 | Probable TonB-dependent outer membrane ferrichrome-iron receptor precursor FhuA | 1348 | 2095 |
THC0290_N_0588 | Rfp41 | indep | 955247:955570 + | A1838 B563 C145 | 6.69 | 1.89 | new transcription segment | 1362 | 3932 |
THC0290_0801 | CDS | 955843:956211 - | A370 B141 C39 | 10.69 | 1.22 | Protein of unknown function | 1364 | 472 | |
THC0290_0806 | pcm | CDS | 960228:960869 + | A311 B117 C33 | 10.43 | 1.48 | Protein-L-isoaspartate(D-aspartate) O-methyltransferase | 1370 | 396 |
THC0290_N_0592 | 3prime | 962079:962138 + | A1190 B409 C123 | 8.04 | -1.54 | new transcription segment | 1373 | 2230 | |
THC0290_0823 | gldI | CDS | 982263:982829 + | A887 B276 C76 | 11.41 | 1.35 | Gliding motility lipoprotein precursor GldI | 1399 | 1814 |
THC0290_0829 | CDS | 988595:989146 + | A1762 B546 C143 | 11.95 | 1.76 | Probable ribosomal-protein-amino-adic N-acetyltransferase | 1406 | 3411 | |
THC0290_0843 | wbsE | CDS | 1004237:1005373 - | A1465 B506 C142 | 8.23 | 1.61 | Putative glycosyl transferase WbsE | 1430 | 2659 |
THC0290_0848 | yydA | CDS | 1008755:1009228 - | A1619 B535 C143 | 9.98 | 1.22 | Protein of unknown function YydA | 1436 | 2926 |
THC0290_0850 | yjeB | CDS | 1009520:1009939 - | A894 B277 C76 | 7.86 | 1.87 | Protein of unknown function YjeB | 1438 | 1822 |
THC0290_0856 | CDS | 1016592:1017284 - | A1762 B546 C143 | 13.31 | 2.04 | Two-component system response regulatory protein, LytTR family | 1448 | 3418 | |
THC0290_0873 | CDS | 1030281:1030799 - | A1751 B546 C143 | 12.95 | 1.20 | Protein of unknown function | 1471 | 3337 | |
THC0290_0880 | coaE | CDS | 1037592:1038176 + | A1765 B546 C143 | 11.97 | 1.21 | Dephospho-CoA kinase | 1480 | 3560 |
THC0290_0881 | rprX | CDS | 1038245:1039828 + | A1765 B546 C143 | 13.36 | 1.59 | Two-component system sensor histidine kinase RprX | 1482 | 3521 |
THC0290_N_0634 | 3prime | 1040534:1040595 + | A1312 B451 C132 | 5.26 | -2.18 | new transcription segment | 1484 | 2454 | |
THC0290_N_0639 | intra | 1048848:1048930 + | A646 B183 C44 | 6.37 | -4.94 | new transcription segment | 1498 | 1406 | |
THC0290_0893 | CDS | 1052483:1053235 + | A1753 B546 C143 | 13.39 | 2.13 | Protein of unknown function precursor | 1503 | 3355 | |
THC0290_0895 | CDS | 1054120:1055541 + | A1292 B436 C127 | 12.68 | -1.03 | Probable metallo-beta-lactamase | 1506 | 2430 | |
THC0290_0896 | CDS | 1055511:1055870 + | A1292 B436 C127 | 12.12 | -1.35 | Rhodanese-like domain protein | 1507 | 2431 | |
THC0290_0897 | CDS | 1055873:1056070 + | A1292 B436 C127 | 11.91 | -1.39 | Hypothetical transmembrane protein | 1508 | 2432 | |
THC0290_0898 | CDS | 1056073:1056375 + | A1292 B436 C127 | 11.75 | -1.35 | Thioredoxin family protein | 1509 | 2433 | |
THC0290_0904 | npdA | CDS | 1063992:1064684 + | A1602 B535 C143 | 10.94 | 1.47 | NAD-dependent deacetylase | 1518 | 2881 |
THC0290_0913 | pyrR1 | CDS | 1074804:1075340 + | A1566 B528 C143 | 12.72 | 1.19 | Bifunctional protein : pyrimidine operon regulatory protein and uracil phosphoribosyltransferase | 1532 | 2834 |
THC0290_tRNA_0017 | tRNA | 1081988:1082061 + | A1769 B546 C143 | 13.85 | 2.80 | transfer RNA-Thr | 1548 | 3766 | |
THC0290_0925 | CDS | 1086697:1087044 + | A1496 B512 C143 | 12.70 | 1.29 | Protein of unknown function | 1553 | 2712 | |
THC0290_N_0658 | 3prime | 1087688:1087763 - | A1700 B546 C143 | 7.50 | 3.98 | new transcription segment | 1556 | 3116 | |
THC0290_0927 | CDS | 1087764:1088015 - | A1768 B546 C143 | 12.29 | 2.05 | Probable ferredoxin | 1558 | 3652 | |
THC0290_0929 | corA | CDS | 1089573:1090643 + | A77 B35 C14 | 9.97 | 1.29 | Magnesium and cobalt transport protein CorA | 1561 | 90 |
THC0290_0939 | rlmF | CDS | 1106178:1107122 - | A106 B45 C16 | 9.38 | 1.34 | Ribosomal RNA large subunit methyltransferase F | 1581 | 132 |
THC0290_0959 | CDS | 1130552:1130911 - | A1781 B546 C143 | 11.28 | 1.16 | Probable transcriptional regulator | 1617 | 3825 | |
THC0290_N_0688 | 3prime | 1134356:1134819 + | A1820 B557 C145 | 6.23 | -3.02 | new transcription segment | 1625 | 3913 | |
THC0290_0965 | CDS | 1135455:1135643 - | A1769 B546 C143 | 10.03 | 1.86 | Hypothetical protein | 1627 | 3791 | |
THC0290_0966 | CDS | 1135889:1136275 + | A1758 B546 C143 | 8.19 | 2.38 | Protein of unknown function | 1628 | 3364 | |
THC0290_0969 | CDS | 1138406:1138603 + | A1751 B546 C143 | 14.58 | 1.91 | Protein of unknown function | 1632 | 3335 | |
THC0290_0970 | oxyR | CDS | 1138817:1139758 - | A1861 B573 C149 | 9.09 | 1.14 | Redox-sensitive transcriptional activator OxyR | 1634 | 3960 |
THC0290_0974 | CDS | 1143261:1143719 - | A347 B129 C35 | 12.04 | 1.13 | Probable transcriptional regulator, AsnC family | 1640 | 447 | |
THC0290_0977 | CDS | 1147602:1149359 - | A1795 B549 C143 | 8.64 | 1.15 | Esterase/lipase/thioesterase family protein precursor | 1647 | 3864 | |
THC0290_0979 | CDS | 1152256:1152894 + | A1864 B574 C149 | 14.92 | 1.52 | Probable peroxiredoxin | 1650 | 3964 | |
THC0290_0986 | CDS | 1159706:1160173 - | A884 B274 C75 | 11.27 | 1.54 | Probable transcriptional regulator, MarR-family | 1661 | 1810 | |
THC0290_0994 | lon | CDS | 1168825:1171275 + | A837 B254 C69 | 11.37 | -1.29 | S16 family, ATP-dependent endopeptidase La | 1672 | 1744 |
THC0290_1006 | CDS | 1184239:1184796 - | A1473 B507 C142 | 9.32 | 1.28 | LemA family protein | 1694 | 2668 | |
THC0290_1017 | kdpA | CDS | 1196669:1198390 + | A1628 B539 C143 | 9.72 | -1.26 | Potassium-transporting ATPase A subunit | 1713 | 2942 |
THC0290_1024 | CDS | 1206629:1207081 - | A1768 B546 C143 | 11.73 | 2.38 | Probable lipoprotein precursor | 1723 | 3628 | |
THC0290_1027 | gene | 1208124:1208453 - | A1452 B504 C142 | 8.86 | 2.21 | Conserved membrane protein of unknown function (fragment) | 1726 | 2644 | |
THC0290_N_0731 | intra | 1210556:1210669 - | A505 B177 C44 | 5.60 | -2.53 | new transcription segment | 1733 | 675 | |
THC0290_1033 | yncA | CDS | 1210670:1211167 - | A1475 B507 C142 | 9.83 | 1.96 | Probable phosphinothricin N-acetyltransferase YncA | 1734 | 2673 |
THC0290_1035 | CDS | 1212972:1213316 + | A1762 B546 C143 | 14.62 | 1.90 | Protein of unknown function | 1736 | 3394 | |
THC0290_N_0733 | 3prime | 1213317:1213392 + | A1762 B546 C143 | 10.13 | 2.41 | new transcription segment | 1737 | 3413 | |
THC0290_1036 | fjo10 | CDS | 1213453:1213833 - | A1768 B546 C143 | 14.39 | 1.82 | Probable lipoprotein precursor Fjo10. Putative cation transport ATPase | 1739 | 3724 |
THC0290_1045 | ssb | CDS | 1221567:1221989 + | A1437 B499 C142 | 10.71 | 1.18 | Single-strand DNA-binding protein Ssb | 1754 | 2621 |
THC0290_N_0742 | Rfp48 | indep | 1225076:1225422 + | A1769 B546 C143 | 7.96 | 1.79 | new transcription segment | 1759 | 3742 |
THC0290_1055 | CDS | 1233132:1235285 + | A556 B183 C44 | 7.80 | -1.46 | Probable outer membrane protein precursor | 1770 | 805 | |
THC0290_1056 | CDS | 1235407:1236027 + | A556 B183 C44 | 10.35 | -1.24 | Protein of unknown function | 1771 | 806 | |
THC0290_N_0747 | intra | 1236028:1236085 + | A556 B183 C44 | 9.67 | -1.36 | new transcription segment | 1772 | 804 | |
THC0290_N_0752 | 3prime | 1249246:1250138 + | A124 B51 C18 | 5.45 | -1.94 | new transcription segment | 1791 | 157 | |
THC0290_1086 | ddpX | CDS | 1266894:1267535 + | A1361 B469 C136 | 8.96 | 1.52 | D-alanyl-D-alanine dipeptidase | 1813 | 2522 |
THC0290_N_0759 | 3prime | 1267045:1267535 - | A189 B69 C21 | 5.42 | 2.15 | new transcription segment | 1814 | 235 | |
THC0290_1106 | CDS | 1294577:1294918 - | A1614 B535 C143 | 12.51 | 1.56 | Probable arsenate reductase (glutaredoxin) | 1853 | 2910 | |
THC0290_1114 | CDS | 1299960:1300283 - | A1721 B546 C143 | 14.74 | 2.20 | Probable transcriptional regulator, ArsR family | 1864 | 3174 | |
THC0290_tRNA_0018 | tRNA | 1307576:1307663 + | A1769 B546 C143 | 15.02 | 2.92 | transfer RNA-Ser | 1873 | 3781 | |
THC0290_1121 | CDS | 1307925:1309172 + | A1519 B521 C143 | 6.96 | 2.32 | Probable transposase | 1875 | 2750 | |
THC0290_1128 | CDS | 1316964:1317203 - | A1769 B546 C143 | 10.44 | 1.74 | Hypothetical protein | 1884 | 3792 | |
THC0290_1134 | gene | 1325575:1327311 + | A1734 B546 C143 | 8.35 | 1.90 | Truncated peptidase precursor, S9 family, C-terminal region | 1892 | 3206 | |
THC0290_1138 | CDS | 1330262:1330645 - | A1795 B549 C143 | 8.91 | 2.09 | Hypothetical protein | 1896 | 3857 | |
THC0290_1140 | gene | 1331524:1333155 + | A1333 B461 C133 | 5.28 | 2.12 | Truncated protein, C-terminal region | 1898 | 2482 | |
THC0290_1144 | CDS | 1335777:1336403 + | A1525 B521 C143 | 5.66 | 3.01 | Protein of unknown function | 1902 | 2758 | |
THC0290_1147 | gene | 1337695:1338009 + | A1745 B546 C143 | 6.89 | 2.15 | Truncated protein, C-terminal region | 1905 | 3234 | |
THC0290_1148 | gene | 1338006:1338212 + | A960 B304 C83 | 8.15 | 2.49 | Truncated protein, N-terminal region | 1906 | 1900 | |
THC0290_1152 | CDS | 1339611:1343918 + | A1734 B546 C143 | 7.74 | 1.40 | Probable hybrid two-component system sensor histidine kinase and response regulator receiver | 1910 | 3207 | |
THC0290_1157 | CDS | 1348785:1349876 + | A1523 B521 C143 | 5.42 | 2.69 | Putative transporting permease | 1915 | 2756 | |
THC0290_1164 | CDS | 1354948:1356420 + | A1745 B546 C143 | 8.75 | 1.55 | Outer membrane protein precursor, OmpA family | 1922 | 3241 | |
THC0290_1165 | CDS | 1356605:1357303 + | A1705 B546 C143 | 6.93 | 1.85 | Probable lipoprotein precursor | 1923 | 3123 | |
THC0290_1187 | CDS | 1373220:1373978 + | A1003 B318 C86 | 6.58 | 1.03 | Probable ABC-type transport system, permease component | 1946 | 1958 | |
THC0290_1199 | CDS | 1384160:1384657 + | A1746 B546 C143 | 7.72 | 1.96 | Protein of unknown function precursor | 1959 | 3245 | |
THC0290_1203 | CDS | 1386310:1386462 + | A1311 B450 C132 | 6.03 | -4.13 | Conserved exported protein of unknown function | 1963 | 2453 | |
THC0290_1205 | CDS | 1386748:1387101 + | A1768 B546 C143 | 8.97 | 1.20 | Hypothetical protein | 1965 | 3690 | |
THC0290_1206 | CDS | 1387098:1387430 + | A1380 B474 C137 | 5.91 | -2.97 | Hypothetical protein | 1966 | 2548 | |
THC0290_tRNA_0020 | tRNA | 1406725:1406801 + | A762 B226 C62 | 14.68 | 1.55 | transfer RNA-Ala | 1988 | 1636 | |
THC0290_1233 | CDS | 1426680:1427324 + | A1294 B437 C127 | 11.30 | -2.26 | Probable peroxiredoxin | 2015 | 2435 | |
THC0290_1236 | CDS | 1428816:1429214 - | A1793 B549 C143 | 10.94 | 1.49 | Cytochrome c family protein | 2018 | 3849 | |
THC0290_1243 | CDS | 1435961:1436539 - | A707 B201 C52 | 5.53 | -3.30 | Probable transcriptional regulator, TetR family | 2026 | 1537 | |
THC0290_N_0806 | Rfp55 | indep | 1436072:1436459 + | A1768 B546 C143 | 8.31 | 1.12 | new transcription segment | 2027 | 3667 |
THC0290_N_0814 | Rfp56 | indep | 1444415:1444724 - | A1768 B546 C143 | 9.03 | 1.98 | new transcription segment | 2041 | 3700 |
THC0290_1252 | CDS | 1446225:1446704 - | A1762 B546 C143 | 14.88 | 1.58 | Universal stress protein, UspA family | 2044 | 3425 | |
THC0290_N_0820 | 3prime | 1465659:1465713 - | A628 B183 C44 | 5.15 | -2.16 | new transcription segment | 2061 | 1352 | |
THC0290_1269 | CDS | 1468395:1468811 - | A1768 B546 C143 | 12.86 | 1.96 | MutT/nudix family protein | 2067 | 3635 | |
THC0290_1270 | CDS | 1468900:1469292 + | A1615 B535 C143 | 11.14 | 1.76 | Protein of unknown function | 2068 | 2917 | |
THC0290_1278 | hisG | CDS | 1475685:1476542 - | A709 B202 C53 | 5.38 | -1.86 | ATP phosphoribosyltransferase | 2079 | 1543 |
THC0290_1279 | CDS | 1476834:1477277 - | A76 B35 C14 | 9.23 | 1.77 | Probable transmembrane protein of unknown function | 2082 | 88 | |
THC0290_1282 | CDS | 1481726:1482610 - | A1747 B546 C143 | 13.46 | 1.04 | Transposase IS982 family | 2087 | 3258 | |
THC0290_N_0844 | Rfp59 | indep | 1505987:1506397 - | A1768 B546 C143 | 6.70 | 1.89 | new transcription segment | 2126 | 3680 |
THC0290_1312 | CDS | 1513488:1514048 - | A1745 B546 C143 | 10.07 | 1.65 | Protein of unknown function | 2136 | 3233 | |
THC0290_1314 | CDS | 1514838:1515227 - | A1747 B546 C143 | 11.92 | 1.15 | Probable transmembrane protein of unknown function | 2138 | 3250 | |
THC0290_1325 | CDS | 1529121:1529963 + | A319 B119 C33 | 9.26 | 1.86 | Probable transcriptional regulator, AraC family | 2149 | 405 | |
THC0290_N_0847 | intra | 1529964:1530048 + | A319 B119 C33 | 9.61 | 1.38 | new transcription segment | 2150 | 406 | |
THC0290_1335 | CDS | 1539932:1540345 + | A1449 B502 C142 | 11.48 | 1.07 | Probable two-component system response regulatory protein | 2161 | 2640 | |
THC0290_N_0850 | 3prime | 1546729:1546916 + | A179 B65 C21 | 5.30 | -2.85 | new transcription segment | 2169 | 223 | |
THC0290_1344 | CDS | 1552913:1553296 - | A1795 B549 C143 | 11.17 | 2.00 | Transposase IS1 family | 2172 | 3856 | |
THC0290_1355 | CDS | 1564986:1566110 + | A1487 B509 C142 | 10.64 | 1.25 | Protein of unknown function | 2191 | 2692 | |
THC0290_1356 | CDS | 1566126:1566971 + | A1020 B327 C89 | 10.25 | 1.09 | Protein of unknown function | 2192 | 1975 | |
THC0290_1358 | ung | CDS | 1568078:1568740 - | A1768 B546 C143 | 10.61 | 1.48 | Uracil-DNA glycosylase | 2197 | 3718 |
THC0290_1368 | tal | CDS | 1580392:1581048 - | A1745 B546 C143 | 12.86 | 1.56 | Transaldolase | 2211 | 3237 |
THC0290_N_0868 | intra | 1581049:1581297 - | A1745 B546 C143 | 10.97 | 1.76 | new transcription segment | 2212 | 3236 | |
THC0290_1369 | CDS | 1581298:1582101 - | A636 B183 C44 | 6.69 | -2.82 | Probable short-chain type dehydrogenase | 2214 | 1373 | |
THC0290_miscRNA_0045 | Rfp61 | misc_RNA | 1582336:1582433 - | A1769 B546 C143 | 14.15 | 2.95 | Bacterial small signal recognition particle RNA | 2217 | 3762 |
THC0290_N_0870 | 3prime | 1583575:1584025 + | A1701 B546 C143 | 10.06 | 1.76 | new transcription segment | 2219 | 3117 | |
THC0290_tRNA_0023 | tRNA | 1604080:1604156 - | A762 B226 C62 | 14.82 | 1.51 | transfer RNA-Ala | 2255 | 1639 | |
THC0290_N_0895 | 5prime | 1623118:1623309 - | A68 B33 C14 | 9.76 | 1.23 | new transcription segment | 2282 | 79 | |
THC0290_N_0896 | intra | 1625494:1625575 + | A1669 B542 C143 | 9.51 | 1.14 | new transcription segment | 2284 | 3054 | |
THC0290_N_0899 | 3prime-PT | 1626413:1626925 + | A1819 B557 C145 | 5.11 | -2.20 | new transcription segment | 2288 | 3910 | |
THC0290_N_0904 | 5prime | 1637059:1637201 - | A1768 B546 C143 | 13.39 | 2.15 | new transcription segment | 2301 | 3639 | |
THC0290_N_0905 | 5prime | 1637088:1637440 + | A1563 B526 C143 | 13.79 | 1.22 | new transcription segment | 2302 | 2829 | |
THC0290_1422 | CDS | 1646261:1647379 + | A530 B180 C44 | 8.88 | 1.01 | Protein of unknown function | 2313 | 721 | |
THC0290_N_0910 | 3prime-PT | 1651904:1652210 - | A1745 B546 C143 | 11.05 | 2.56 | new transcription segment | 2318 | 3240 | |
THC0290_N_0923 | 3prime | 1669052:1669388 + | A1659 B542 C143 | 8.05 | -1.41 | new transcription segment | 2340 | 3032 | |
THC0290_N_0928 | 5prime | 1672904:1672948 - | A1331 B461 C133 | 5.78 | 3.31 | new transcription segment | 2349 | 2479 | |
THC0290_1441 | speE | CDS | 1672956:1673624 + | A1768 B546 C143 | 10.90 | 1.25 | Putative spermidine synthase | 2350 | 3701 |
THC0290_1444 | CDS | 1675692:1676540 - | A1762 B546 C143 | 12.92 | 1.27 | Protein of unknown function | 2355 | 3424 | |
THC0290_N_0937 | 5prime | 1681345:1681454 - | A1762 B546 C143 | 10.79 | 2.48 | new transcription segment | 2368 | 3420 | |
THC0290_N_0939 | 3prime | 1683788:1684364 - | A301 B112 C32 | 7.31 | 1.52 | new transcription segment | 2374 | 386 | |
THC0290_N_0944 | intra | 1690140:1690189 - | A1768 B546 C143 | 10.11 | 2.65 | new transcription segment | 2384 | 3643 | |
THC0290_N_0946 | intra | 1695609:1695759 - | A611 B183 C44 | 9.27 | -1.10 | new transcription segment | 2389 | 1287 | |
THC0290_1480 | CDS | 1718908:1719456 - | A303 B113 C32 | 9.55 | 1.39 | Protein of unknown function | 2423 | 388 | |
THC0290_N_0969 | 5prime | 1724967:1725040 - | A1745 B546 C143 | 11.10 | 1.37 | new transcription segment | 2435 | 3242 | |
THC0290_N_0972 | intra | 1727896:1728001 + | A630 B183 C44 | 8.81 | -1.08 | new transcription segment | 2442 | 1362 | |
THC0290_N_0978 | 5prime | 1732259:1732334 - | A1762 B546 C143 | 9.96 | 1.24 | new transcription segment | 2452 | 3417 | |
THC0290_1495 | CDS | 1732704:1735469 + | A1436 B499 C142 | 6.97 | 1.65 | Protein of unknown function | 2453 | 2620 | |
THC0290_N_0979 | 3prime | 1738057:1738101 + | A93 B43 C16 | 5.48 | -3.08 | new transcription segment | 2455 | 109 | |
THC0290_1499 | CDS | 1741164:1741574 + | A1768 B546 C143 | 13.71 | 1.90 | Probable transmembrane protein of unknown function | 2460 | 3649 | |
THC0290_N_0988 | 3prime | 1750802:1750865 - | A509 B179 C44 | 11.27 | -1.03 | new transcription segment | 2474 | 680 | |
THC0290_1513 | CDS | 1758332:1759009 + | A1433 B497 C142 | 8.63 | 1.45 | Probable transcriptional regulatory protein, Crp/Fnr family | 2482 | 2617 | |
THC0290_1517 | gene | 1760953:1761909 + | A1416 B488 C140 | 5.60 | 2.99 | Conserved protein of unknown function | 2487 | 2597 | |
THC0290_N_0993 | 3prime | 1769587:1769637 + | A1331 B461 C133 | 5.04 | 1.89 | new transcription segment | 2493 | 2480 | |
THC0290_1522 | CDS | 1769814:1770386 - | A852 B256 C70 | 8.93 | 1.55 | Protein of unknown function related to microcin resistance protein McbG | 2494 | 1773 | |
THC0290_tRNA_0028 | tRNA | 1770433:1770509 - | A1769 B546 C143 | 10.37 | 2.80 | transfer RNA-Arg | 2495 | 3771 | |
THC0290_N_1003 | intra | 1788164:1788342 - | A924 B287 C78 | 9.57 | -1.42 | new transcription segment | 2516 | 1858 | |
THC0290_N_1005 | 5prime | 1789837:1789892 + | A75 B35 C14 | 13.17 | 1.57 | new transcription segment | 2519 | 86 | |
THC0290_1538 | CDS | 1792954:1793694 - | A1638 B540 C143 | 13.44 | 1.26 | Probable lipoprotein precursor | 2527 | 2969 | |
THC0290_1542 | CDS | 1796696:1797148 + | A1765 B546 C143 | 12.14 | 1.43 | Protein of unknown function | 2535 | 3480 | |
THC0290_N_1013 | 3prime | 1797054:1798144 - | A1753 B546 C143 | 9.94 | 1.63 | new transcription segment | 2536 | 3349 | |
THC0290_N_1014 | Rfp66 | indep | 1798145:1798224 - | A1768 B546 C143 | 9.94 | 2.36 | new transcription segment | 2538 | 3594 |
THC0290_N_1015 | intra | 1798910:1798967 + | A831 B252 C69 | 5.56 | -3.41 | new transcription segment | 2540 | 1738 | |
THC0290_N_1017 | intra | 1800118:1800206 + | A839 B254 C69 | 8.69 | -1.14 | new transcription segment | 2542 | 1748 | |
THC0290_1556 | CDS | 1810067:1810495 + | A1762 B546 C143 | 13.07 | 1.87 | Protein of unknown function | 2565 | 3397 | |
THC0290_N_1032 | 3prime | 1811572:1811634 - | A1326 B458 C133 | 5.63 | 3.19 | new transcription segment | 2569 | 2472 | |
THC0290_1572 | fdx1 | CDS | 1830238:1830588 - | A1768 B546 C143 | 14.40 | 1.46 | Ferredoxin | 2597 | 3641 |
THC0290_1576 | CDS | 1834022:1834672 + | A1602 B535 C143 | 12.18 | 1.22 | Protein of unknown function | 2603 | 2884 | |
THC0290_1578 | CDS | 1835452:1835757 + | A1768 B546 C143 | 10.07 | 1.57 | Hypothetical transmembrane protein | 2607 | 3646 | |
THC0290_1579 | CDS | 1835787:1836098 - | A1350 B467 C136 | 11.85 | -1.39 | Protein of unknown function | 2608 | 2505 | |
THC0290_1580 | folE1 | CDS | 1836146:1836817 - | A1350 B467 C136 | 12.52 | -1.27 | GTP cyclohydrolase I | 2609 | 2506 |
THC0290_1581 | mrsA | CDS | 1836820:1837458 - | A1751 B546 C143 | 14.19 | 1.05 | Protein-methionine-S-oxide reductase MsrA | 2610 | 3334 |
THC0290_1582 | CDS | 1837569:1838231 + | A1448 B502 C142 | 11.72 | 1.96 | Probable ABC-type transport system, ATPase component | 2611 | 2635 | |
THC0290_1586 | CDS | 1842055:1842597 + | A1765 B546 C143 | 10.91 | 2.38 | RNA polymerase ECF-type sigma factor | 2618 | 3498 | |
THC0290_1587 | CDS | 1842628:1843008 + | A1765 B546 C143 | 11.64 | 2.20 | Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor | 2619 | 3499 | |
THC0290_1588 | CDS | 1843019:1843477 + | A1765 B546 C143 | 12.24 | 1.69 | Protein of unknown function precursor, putative sensor of anti-sigma and ECF sigma factor | 2620 | 3500 | |
THC0290_N_1054 | 3prime | 1843478:1843604 + | A1765 B546 C143 | 11.58 | 1.51 | new transcription segment | 2621 | 3497 | |
THC0290_1590 | gene | 1844029:1844682 - | A1765 B546 C143 | 10.16 | 1.19 | Truncated protein, N-terminal region (fragment) | 2624 | 3488 | |
THC0290_N_1064 | intra | 1857289:1857455 - | A585 B183 C44 | 5.35 | 2.22 | new transcription segment | 2640 | 910 | |
THC0290_N_1068 | intra | 1862203:1863166 - | A1009 B321 C87 | 9.17 | 1.45 | new transcription segment | 2649 | 1964 | |
THC0290_1615 | CDS | 1873536:1873964 + | A1306 B445 C130 | 11.08 | 1.31 | Protein of unknown function | 2668 | 2448 | |
THC0290_1618 | CDS | 1879036:1879245 + | A1250 B419 C125 | 7.33 | 2.12 | Hypothetical protein | 2675 | 2364 | |
THC0290_N_1082 | intra | 1882842:1883282 - | A1768 B546 C143 | 11.30 | 1.43 | new transcription segment | 2681 | 3651 | |
THC0290_N_1084 | 5prime | 1885800:1885859 - | A1730 B546 C143 | 10.69 | 2.64 | new transcription segment | 2686 | 3194 | |
THC0290_1626 | CDS | 1887285:1887971 + | A765 B228 C63 | 11.25 | 1.08 | Probable ABC-type transport system, ATPase component | 2690 | 1650 | |
THC0290_N_1091 | Rfp70 | indep | 1894584:1894642 + | A1769 B546 C143 | 8.07 | 2.59 | new transcription segment | 2700 | 3737 |
THC0290_1638 | argK | CDS | 1899746:1900837 + | A1792 B549 C143 | 10.05 | 1.03 | Periplasmic transport binding protein kinase ArgK | 2712 | 3848 |
THC0290_1644 | CDS | 1907277:1908149 - | A1635 B540 C143 | 11.18 | 1.66 | Protein of unknown function | 2723 | 2964 | |
THC0290_N_1101 | 5prime | 1908150:1908264 - | A1635 B540 C143 | 10.12 | 1.07 | new transcription segment | 2724 | 2966 | |
THC0290_1653 | CDS | 1917528:1918436 - | A1763 B546 C143 | 11.00 | 1.07 | Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor | 2741 | 3434 | |
THC0290_1654 | CDS | 1918439:1918975 - | A1763 B546 C143 | 11.28 | 1.56 | RNA polymerase ECF-type sigma factor | 2742 | 3435 | |
THC0290_1670 | CDS | 1935401:1935784 + | A77 B35 C14 | 11.54 | 2.06 | Protein of unknown function | 2767 | 91 | |
THC0290_1675 | CDS | 1943090:1944706 - | A1055 B348 C104 | 11.53 | 4.25 | Probable asparagine synthetase [glutamine-hydrolyzing] | 2775 | 2022 | |
THC0290_1676 | CDS | 1944906:1945355 - | A1768 B546 C143 | 10.72 | 2.07 | Protein of unknown function | 2777 | 3630 | |
THC0290_N_1128 | 5prime | 1945356:1945410 - | A1768 B546 C143 | 10.87 | 2.56 | new transcription segment | 2778 | 3631 | |
THC0290_1679 | phuR | CDS | 1947394:1949601 + | A1209 B415 C124 | 9.67 | -2.03 | Probable TonB-dependent outer membrane hemin receptor precursor PhuR | 2783 | 2267 |
THC0290_N_1131 | 3prime | 1949602:1950013 + | A1209 B415 C124 | 5.94 | -3.92 | new transcription segment | 2784 | 2268 | |
THC0290_1684 | CDS | 1957116:1957427 - | A349 B129 C35 | 12.02 | 1.16 | Rhodanese-related sulfurtransferase | 2794 | 449 | |
THC0290_N_1137 | 5prime | 1957428:1957643 - | A350 B129 C35 | 12.09 | 1.25 | new transcription segment | 2795 | 450 | |
THC0290_N_1138 | 3prime | 1959433:1959477 + | A1720 B546 C143 | 11.76 | 2.31 | new transcription segment | 2799 | 3173 | |
THC0290_1691 | trpC | CDS | 1962890:1963672 + | A718 B205 C53 | 9.06 | -1.37 | Indole-3-glycerol phosphate synthase | 2807 | 1561 |
THC0290_1695 | CDS | 1966777:1967400 + | A682 B191 C48 | 13.00 | 1.09 | Probable transcriptional regulator, TetR family | 2815 | 1475 | |
THC0290_1697 | CDS | 1968717:1969796 + | A683 B191 C48 | 12.26 | -1.22 | Probable membrane fusion efflux protein | 2817 | 1480 | |
THC0290_N_1145 | intra | 1969797:1970021 + | A683 B191 C48 | 11.04 | -1.32 | new transcription segment | 2818 | 1478 | |
THC0290_1698 | CDS | 1970022:1971608 + | A683 B191 C48 | 10.98 | -1.33 | Major facilitator superfamily (MFS) permease | 2820 | 1481 | |
THC0290_N_1146 | intra | 1971609:1971753 + | A683 B191 C48 | 10.56 | -1.43 | new transcription segment | 2821 | 1479 | |
THC0290_N_1150 | intra | 1977128:1977205 - | A1768 B546 C143 | 13.10 | 1.55 | new transcription segment | 2830 | 3702 | |
THC0290_1704 | CDS | 1977206:1977442 - | A1768 B546 C143 | 13.51 | 2.52 | Hypothetical transmembrane protein | 2831 | 3662 | |
THC0290_N_1152 | Rfp76 | indep | 1982930:1983021 - | A1769 B546 C143 | 10.84 | 4.23 | new transcription segment | 2838 | 3772 |
THC0290_N_1161 | Rfp78 | indep | 1995370:1995588 + | A1768 B546 C143 | 10.73 | 2.06 | new transcription segment | 2856 | 3686 |
THC0290_tRNA_0031 | tRNA | 1999846:1999922 - | A762 B226 C62 | 14.71 | 1.50 | transfer RNA-Ala | 2859 | 1640 | |
THC0290_tRNA_0033 | tRNA | 2003330:2003404 - | A1769 B546 C143 | 13.11 | 3.06 | transfer RNA-Glu | 2865 | 3759 | |
THC0290_tRNA_0034 | tRNA | 2003436:2003507 - | A1769 B546 C143 | 12.89 | 2.98 | transfer RNA-Glu | 2866 | 3760 | |
THC0290_N_1170 | 3prime | 2009459:2009676 - | A1548 B523 C143 | 6.72 | 2.08 | new transcription segment | 2875 | 2793 | |
THC0290_N_1172 | 5prime | 2010199:2010299 + | A1699 B546 C143 | 10.21 | 3.45 | new transcription segment | 2877 | 3111 | |
THC0290_1734 | (dciA) | CDS | 2022210:2022506 - | A1768 B546 C143 | 11.14 | 1.29 | Involved in the control of replication initiation | 2892 | 3675 |
THC0290_1735 | CDS | 2022508:2022927 - | A1768 B546 C143 | 11.82 | 1.69 | Protein of unknown function | 2893 | 3676 | |
THC0290_1737 | bsaA | CDS | 2024278:2024871 - | A1511 B519 C143 | 12.13 | -1.18 | Glutathione peroxidase BsaA | 2897 | 2732 |
THC0290_1745 | CDS | 2033820:2034134 - | A1768 B546 C143 | 11.59 | 1.95 | Probable transcriptional regulator, HxlR family | 2908 | 3599 | |
THC0290_N_1189 | intra | 2042719:2042827 - | A992 B313 C85 | 6.41 | -2.11 | new transcription segment | 2928 | 1947 | |
THC0290_1760 | CDS | 2044991:2045761 - | A348 B129 C35 | 11.11 | 1.09 | Probable DNA polymerase III subunit | 2933 | 448 | |
THC0290_tRNA_0037 | tRNA | 2049271:2049353 + | A1769 B546 C143 | 10.67 | 2.49 | transfer RNA-Leu | 2944 | 3756 | |
THC0290_1774 | CDS | 2056576:2057085 - | A1392 B478 C139 | 11.82 | 1.69 | RNA polymerase ECF-type sigma factor | 2955 | 2566 | |
THC0290_1777 | gpmA | CDS | 2060543:2061067 - | A530 B180 C44 | 5.72 | 1.39 | Phosphoglycerate mutase | 2960 | 720 |
THC0290_1787 | lipA | CDS | 2070093:2070965 + | A1600 B535 C143 | 12.86 | 1.02 | Lipoyl synthase | 2973 | 2877 |
THC0290_1790 | deoD | CDS | 2074226:2075038 - | A706 B201 C52 | 8.64 | -1.60 | Purine-nucleoside phosphorylase | 2978 | 1535 |
THC0290_N_1209 | intra | 2082313:2082391 - | A1088 B365 C107 | 5.59 | -3.46 | new transcription segment | 2991 | 2091 | |
THC0290_1797 | CDS | 2082392:2083183 - | A1088 B365 C107 | 9.16 | -2.40 | Protein of unknown function precursor | 2992 | 2090 | |
THC0290_1798 | CDS | 2083190:2083714 - | A1088 B365 C107 | 9.68 | -1.91 | Protein of unknown function containing ankyrin repeat signature | 2993 | 2103 | |
THC0290_1800 | CDS | 2084766:2085770 - | A1088 B365 C107 | 10.16 | -2.24 | Protein of unknown function | 2995 | 2105 | |
THC0290_1801 | CDS | 2085799:2087151 - | A1088 B365 C107 | 8.57 | -3.38 | Protein of unknown function | 2996 | 2102 | |
THC0290_1802 | CDS | 2087189:2087410 - | A1088 B365 C107 | 10.71 | -1.45 | Hypothetical protein | 2997 | 2100 | |
THC0290_1805 | CDS | 2088958:2090196 + | A1088 B365 C107 | 13.62 | -1.17 | Protein of unknown function | 3000 | 2097 | |
THC0290_N_1210 | intra | 2090197:2090249 + | A1088 B365 C107 | 10.48 | -2.52 | new transcription segment | 3001 | 2093 | |
THC0290_1806 | irpA | CDS | 2090250:2091365 + | A1088 B365 C107 | 13.34 | -1.42 | Iron-regulated protein A precursor | 3002 | 2098 |
THC0290_1807 | CDS | 2091368:2092735 + | A483 B172 C44 | 10.32 | -1.69 | Probable vitamin K-dependent gamma-carboxylase | 3003 | 636 | |
THC0290_1811 | CDS | 2096360:2096578 - | A1088 B365 C107 | 9.34 | -2.20 | Protein of unknown function | 3010 | 2096 | |
THC0290_1812 | (hmuY) | CDS | 2096691:2097335 - | A1088 B365 C107 | 13.50 | -1.99 | Putative heme binding lipoprotein precursor | 3012 | 2089 |
THC0290_1813 | CDS | 2097360:2097836 - | A1088 B365 C107 | 12.65 | -2.21 | Probable transmembrane protein of unknown function | 3013 | 2086 | |
THC0290_1816 | CDS | 2100947:2101285 + | A1088 B365 C107 | 13.67 | -1.59 | Protein of unknown function | 3016 | 2087 | |
THC0290_1830 | CDS | 2122074:2123462 + | A1765 B546 C143 | 10.89 | 1.39 | Protein of unknown function | 3035 | 3496 | |
THC0290_1834 | CDS | 2126856:2127110 - | A1393 B478 C139 | 8.86 | 2.80 | Hypothetical protein | 3040 | 2567 | |
THC0290_1836 | CDS | 2130208:2130960 - | A1768 B546 C143 | 11.94 | 1.32 | Two-component system response regulatory protein, LytTR family | 3042 | 3615 | |
THC0290_tRNA_0038 | tRNA | 2134524:2134600 - | A762 B226 C62 | 14.71 | 1.51 | transfer RNA-Ala | 3046 | 1641 | |
THC0290_N_1239 | intra | 2152005:2152052 + | A1332 B461 C133 | 5.62 | 2.31 | new transcription segment | 3078 | 2481 | |
THC0290_1868 | CDS | 2168095:2168679 - | A1749 B546 C143 | 12.31 | 1.17 | RNA polymerase ECF-type sigma factor | 3109 | 3328 | |
THC0290_N_1254 | 5prime | 2168680:2168760 - | A1769 B546 C143 | 14.26 | 3.24 | new transcription segment | 3110 | 3753 | |
THC0290_1879 | udk | CDS | 2186229:2186837 + | A335 B125 C35 | 11.46 | 1.29 | Uridine kinase | 3129 | 435 |
THC0290_1880 | CDS | 2186995:2187318 + | A889 B276 C76 | 11.53 | 1.40 | Probable transmembrane protein of unknown function. Putative septum formation initiator | 3132 | 1816 | |
THC0290_N_1272 | 5prime | 2202131:2202187 - | A1707 B546 C143 | 13.21 | 2.19 | new transcription segment | 3156 | 3128 | |
THC0290_miscRNA_0049 | Rfp82 | misc_RNA | 2215650:2215756 + | A1768 B546 C143 | 15.26 | 1.83 | 6S-Flavo RNA | 3178 | 3730 |
THC0290_1910 | CDS | 2220154:2221044 + | A170 B63 C19 | 9.67 | -1.02 | Rhomboid family protein | 3183 | 211 | |
THC0290_1912 | CDS | 2222462:2222740 + | A1437 B499 C142 | 11.75 | 1.82 | Hypothetical protein | 3188 | 2622 | |
THC0290_1913 | CDS | 2222771:2223451 - | A1768 B546 C143 | 14.27 | 2.27 | Probable transcriptional regulatory protein, Crp/Fnr family | 3190 | 3678 | |
THC0290_1914 | ccoI | CDS | 2223560:2225938 + | A701 B199 C52 | 8.35 | -2.05 | Probable cytochrome cbb3 oxidase maturation protein CcoI | 3191 | 1528 |
THC0290_1915 | ccoS | CDS | 2226015:2226212 + | A700 B199 C52 | 10.42 | -3.46 | Probable cytochrome cbb3 oxidase maturation protein CcoS | 3193 | 1526 |
THC0290_1916 | CDS | 2226196:2227179 + | A700 B199 C52 | 10.07 | -3.53 | Probable acyl-[acyl-carrier-protein] desaturase | 3194 | 1527 | |
THC0290_1917 | ccoN/ccoO | CDS | 2227239:2229419 + | A700 B199 C52 | 10.63 | -3.06 | Cytochrome c oxidase, cbb3-type, subunit I and II | 3196 | 1521 |
THC0290_N_1292 | intra | 2229420:2229495 + | A700 B199 C52 | 10.39 | -3.97 | new transcription segment | 3197 | 1520 | |
THC0290_1918 | ccoQ | CDS | 2229496:2229687 + | A700 B199 C52 | 9.99 | -4.10 | Cytochrome c oxidase, cbb3-type, subunit IV | 3198 | 1519 |
THC0290_1919 | ccoP | CDS | 2229694:2230629 + | A700 B199 C52 | 10.53 | -4.03 | Cytochrome c oxidase, cbb3-type, subunit III | 3199 | 1522 |
THC0290_1920 | ccoG | CDS | 2230634:2232052 + | A700 B199 C52 | 9.57 | -4.33 | Probable cytochrome cbb3 oxidase maturation protein CcoG | 3200 | 1518 |
THC0290_1921 | ccoH | CDS | 2232073:2232522 + | A698 B198 C52 | 10.19 | -2.57 | Probable cytochrome cbb3 oxidase maturation protein CcoH | 3201 | 1514 |
THC0290_N_1293 | intra | 2232523:2232613 + | A698 B198 C52 | 9.94 | -2.93 | new transcription segment | 3202 | 1513 | |
THC0290_1922 | CDS | 2232614:2233318 + | A698 B198 C52 | 9.82 | -2.79 | Probable transmembrane protein of unknown function | 3203 | 1515 | |
THC0290_1923 | CDS | 2233345:2233575 + | A698 B198 C52 | 9.99 | -2.56 | Protein of unknown function | 3204 | 1512 | |
THC0290_N_1297 | repeated_region | 2239621:2239993 - | A847 B256 C70 | 7.40 | 1.30 | new transcription segment | 3210 | 1767 | |
THC0290_N_1298 | 3prime | 2240124:2240177 - | A297 B110 C31 | 5.31 | 2.36 | new transcription segment | 3211 | 382 | |
THC0290_N_1300 | 5prime | 2252602:2252830 - | A1603 B535 C143 | 14.18 | 1.46 | new transcription segment | 3217 | 2885 | |
THC0290_N_1305 | 3prime | 2255500:2255565 - | A636 B183 C44 | 6.15 | -4.40 | new transcription segment | 3224 | 1374 | |
THC0290_tRNA_0041 | tRNA | 2267163:2267236 - | A1769 B546 C143 | 12.68 | 2.08 | transfer RNA-Trp | 3237 | 3758 | |
THC0290_tRNA_0043 | tRNA | 2268699:2268782 - | A1769 B546 C143 | 13.05 | 2.41 | transfer RNA-Tyr | 3243 | 3764 | |
THC0290_tRNA_0044 | tRNA | 2268921:2268997 - | A1769 B546 C143 | 13.89 | 2.72 | transfer RNA-Thr | 3245 | 3767 | |
THC0290_1946 | xerC | CDS | 2269424:2270320 - | A1043 B344 C102 | 10.94 | 1.61 | Tyrosine recombinase XerC | 3248 | 2007 |
THC0290_1950 | CDS | 2272914:2273141 - | A1762 B546 C143 | 12.87 | 2.07 | Hypothetical protein | 3255 | 3419 | |
THC0290_N_1318 | 5prime | 2273142:2273206 - | A1768 B546 C143 | 14.56 | 2.29 | new transcription segment | 3256 | 3660 | |
THC0290_1955 | CDS | 2279501:2281108 - | A256 B91 C27 | 14.59 | -1.05 | SusD/RagB family lipoprotein precursor | 3266 | 336 | |
THC0290_N_1334 | 5prime | 2296507:2296565 - | A1768 B546 C143 | 13.24 | 1.60 | new transcription segment | 3290 | 3713 | |
THC0290_N_1335 | 5prime | 2299884:2300001 - | A1707 B546 C143 | 12.41 | 1.90 | new transcription segment | 3295 | 3129 | |
THC0290_N_1339 | 5prime | 2304591:2304827 - | A1768 B546 C143 | 10.57 | 2.91 | new transcription segment | 3303 | 3622 | |
THC0290_1980 | CDS | 2308935:2309735 + | A385 B146 C41 | 10.85 | 1.11 | Pseudouridylate synthase | 3310 | 493 | |
THC0290_1984 | CDS | 2311541:2311834 + | A1768 B546 C143 | 13.39 | 3.14 | Protein of unknown function | 3316 | 3619 | |
THC0290_1985 | CDS | 2311840:2312199 + | A1768 B546 C143 | 12.49 | 3.06 | Probable transcriptional regulator, XRE family | 3317 | 3620 | |
THC0290_1988 | CDS | 2314643:2314909 - | A1747 B546 C143 | 12.02 | 1.26 | Protein of unknown function | 3322 | 3252 | |
THC0290_1989 | CDS | 2314906:2315157 - | A1747 B546 C143 | 12.13 | 1.41 | Hypothetical protein | 3323 | 3253 | |
THC0290_1990 | CDS | 2315256:2315495 + | A1768 B546 C143 | 12.02 | 1.02 | Protein of unknown function | 3324 | 3715 | |
THC0290_2001 | CDS | 2326865:2327770 - | A1568 B528 C143 | 8.78 | 1.22 | Probable peptidase | 3339 | 2836 | |
THC0290_2017 | CDS | 2343757:2344968 - | A601 B183 C44 | 7.52 | -1.67 | Protein of unknown function | 3357 | 1151 | |
THC0290_N_1355 | 3prime | 2356042:2356382 - | A1088 B365 C107 | 9.50 | -2.76 | new transcription segment | 3371 | 2084 | |
THC0290_2029 | CDS | 2356383:2357288 - | A1088 B365 C107 | 11.60 | -2.13 | Protein of unknown function precursor | 3372 | 2083 | |
THC0290_2031 | CDS | 2358462:2359160 + | A1088 B365 C107 | 8.84 | -2.33 | Hypothetical protein precursor | 3374 | 2099 | |
THC0290_2056 | recR | CDS | 2389224:2389844 - | A1768 B546 C143 | 9.71 | 1.07 | Recombination protein RecR | 3408 | 3674 |
THC0290_N_1373 | Rfp85 | indep | 2396881:2397005 + | A1689 B545 C143 | 7.18 | 2.19 | new transcription segment | 3424 | 3096 |
THC0290_2068 | rpoA | CDS | 2400410:2401402 - | A599 B183 C44 | 13.38 | -1.07 | DNA-directed RNA polymerase alpha subunit RpoA | 3432 | 1016 |
THC0290_N_1378 | intra | 2402033:2402123 - | A599 B183 C44 | 13.86 | -1.18 | new transcription segment | 3434 | 1015 | |
THC0290_2075 | rplO | CDS | 2404585:2405037 - | A599 B183 C44 | 13.86 | -1.01 | 50S ribosomal protein L15 | 3440 | 1012 |
THC0290_2077 | rpsE | CDS | 2405245:2405769 - | A599 B183 C44 | 14.34 | -1.28 | 30S ribosomal protein S5 | 3442 | 1032 |
THC0290_2078 | rplR | CDS | 2405776:2406126 - | A599 B183 C44 | 14.26 | -1.24 | 50S ribosomal protein L18 | 3443 | 1033 |
THC0290_2090 | rpsS | CDS | 2410871:2411149 - | A599 B183 C44 | 14.05 | -1.06 | 30S ribosomal protein S19 | 3456 | 1040 |
THC0290_2096 | fusA | CDS | 2413957:2416113 - | A599 B183 C44 | 13.51 | -1.02 | Elongation factor G (EF-G) | 3463 | 1037 |
THC0290_N_1383 | intra | 2419137:2419200 + | A169 B62 C19 | 6.56 | -3.87 | new transcription segment | 3469 | 210 | |
THC0290_N_1390 | intra | 2428899:2428992 - | A601 B183 C44 | 7.44 | -1.31 | new transcription segment | 3483 | 1138 | |
THC0290_2111 | CDS | 2434311:2434772 + | A1795 B549 C143 | 11.88 | 1.47 | Protein of unknown function containing LysM domain | 3489 | 3858 | |
THC0290_N_1401 | 3prime | 2446839:2447017 + | A1307 B446 C130 | 5.56 | 2.93 | new transcription segment | 3516 | 2449 | |
THC0290_N_1405 | 5prime | 2456890:2457173 + | A1699 B546 C143 | 11.03 | 1.23 | new transcription segment | 3527 | 3112 | |
THC0290_N_1411 | 3prime | 2464809:2464887 - | A454 B168 C44 | 5.95 | -3.03 | new transcription segment | 3541 | 590 | |
THC0290_N_1413 | 3prime | 2468143:2468214 - | A508 B178 C44 | 4.73 | -1.73 | new transcription segment | 3546 | 679 | |
THC0290_tRNA_0045 | tRNA | 2481345:2481421 - | A762 B226 C62 | 14.73 | 1.47 | transfer RNA-Ala | 3557 | 1638 | |
THC0290_2157 | CDS | 2491341:2491841 + | A483 B172 C44 | 10.05 | -1.46 | Protein of unknown function | 3573 | 640 | |
THC0290_N_1422 | intra | 2491842:2492026 + | A483 B172 C44 | 10.82 | -1.02 | new transcription segment | 3574 | 641 | |
THC0290_2161 | fpo2 | CDS | 2498317:2498547 - | A622 B183 C44 | 11.08 | -1.09 | Probable transmembrane protein of unknown function Fpo2 | 3581 | 1334 |
THC0290_2174 | nuoN | CDS | 2512490:2513857 - | A601 B183 C44 | 6.70 | -3.14 | NADH dehydrogenase I, N subunit | 3601 | 1184 |
THC0290_2191 | haaO | CDS | 2535272:2535790 - | A1596 B534 C143 | 10.91 | 1.13 | 3-hydroxyanthranilate 3,4-dioxygenase | 3624 | 2872 |
THC0290_2197 | gene | 2542796:2543170 - | A1768 B546 C143 | 11.38 | 1.53 | protein of unknown function (fragment) | 3635 | 3705 | |
THC0290_N_1446 | repeated_region | 2543171:2543514 - | A996 B315 C85 | 5.03 | -2.16 | new transcription segment | 3636 | 1951 | |
THC0290_N_1454 | 5prime | 2552315:2552427 + | A1431 B497 C142 | 12.65 | 2.02 | new transcription segment | 3649 | 2614 | |
THC0290_2205 | CDS | 2554179:2554631 - | A1553 B524 C143 | 12.39 | 1.36 | Probable 6-pyruvoyltetrahydrobiopterin synthase | 3653 | 2812 | |
THC0290_2250 | CDS | 2602642:2602947 - | A1768 B546 C143 | 8.16 | 1.99 | Truncated transposase IS982 family central region | 3711 | 3578 | |
THC0290_N_1483 | 3prime | 2620163:2620219 - | A299 B110 C31 | 4.95 | 1.93 | new transcription segment | 3737 | 384 | |
THC0290_N_1484 | intra | 2624481:2624662 + | A1768 B546 C143 | 12.43 | 1.74 | new transcription segment | 3741 | 3632 | |
THC0290_2270 | CDS | 2627503:2627874 - | A1768 B546 C143 | 9.67 | 1.25 | Protein of unknown function (fragment) | 3745 | 3617 | |
THC0290_2271 | CDS | 2627871:2628104 - | A1575 B530 C143 | 8.86 | 1.10 | Protein of unknown function (fragment) | 3746 | 2845 | |
THC0290_miscRNA_0050 | misc_RNA | 2654507:2654611 - | A1728 B546 C143 | 11.77 | 1.21 | TPP riboswitch [THI element] | 3790 | 3191 | |
THC0290_N_1503 | intra | 2654612:2654704 - | A140 B55 C18 | 5.40 | -3.03 | new transcription segment | 3791 | 179 | |
THC0290_2297 | lpxH | CDS | 2654705:2655457 - | A300 B111 C32 | 9.85 | 1.36 | UDP-2,3-diacylglucosamine hydrolase | 3792 | 385 |
THC0290_2298 | CDS | 2655534:2656004 - | A528 B180 C44 | 10.21 | 1.54 | Probable transcriptional regulator, AsnC family | 3794 | 715 | |
THC0290_2300 | CDS | 2657609:2657995 + | A1432 B497 C142 | 11.18 | 1.58 | Probable transmembrane protein of unknown function | 3797 | 2615 | |
THC0290_2309 | ribE | CDS | 2665529:2666125 + | A1475 B507 C142 | 11.53 | 1.60 | Riboflavin synthase, alpha subunit | 3812 | 2674 |
THC0290_N_1518 | 3prime | 2672322:2672406 - | A620 B183 C44 | 5.77 | -3.70 | new transcription segment | 3825 | 1329 | |
THC0290_N_1519 | intra | 2675960:2676041 - | A1708 B546 C143 | 14.13 | 1.13 | new transcription segment | 3829 | 3132 | |
THC0290_2320 | sufA | CDS | 2676042:2676371 - | A1708 B546 C143 | 14.73 | 1.51 | Scaffold protein for Fe-S assembly, SufA | 3830 | 3131 |
THC0290_2325 | CDS | 2681862:2682191 - | A1596 B534 C143 | 9.93 | 1.14 | Probable ferredoxin | 3838 | 2871 | |
THC0290_N_1524 | 3prime | 2681866:2681941 + | A585 B183 C44 | 5.60 | 2.81 | new transcription segment | 3839 | 911 | |
THC0290_tRNA_0048 | tRNA | 2682256:2682332 + | A1769 B546 C143 | 11.84 | 2.50 | transfer RNA-Ala | 3840 | 3750 | |
THC0290_N_1525 | 3prime | 2682333:2682395 + | A1769 B546 C143 | 9.62 | 2.67 | new transcription segment | 3841 | 3788 | |
THC0290_2326 | CDS | 2682438:2685902 - | A681 B190 C47 | 12.54 | -1.06 | Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein | 3843 | 1473 | |
THC0290_2332 | CDS | 2690655:2691227 - | A1762 B546 C143 | 12.26 | 1.43 | Hypothetical protein precursor | 3852 | 3427 | |
THC0290_N_1534 | 3prime | 2697036:2697334 - | A658 B185 C45 | 12.03 | -1.17 | new transcription segment | 3861 | 1430 | |
THC0290_2336 | CDS | 2697335:2699209 - | A659 B185 C45 | 12.25 | -1.01 | Probable outer membrane protein precursor, OmpA family | 3862 | 1432 | |
THC0290_2337 | porP | CDS | 2699227:2700144 - | A659 B185 C45 | 12.14 | -1.09 | Protein of unknown function precursor PorP | 3863 | 1433 |
THC0290_N_1535 | intra | 2700145:2700215 - | A659 B185 C45 | 12.91 | -1.15 | new transcription segment | 3864 | 1431 | |
THC0290_N_1540 | 3prime | 2716285:2716441 + | A220 B81 C25 | 4.84 | -1.98 | new transcription segment | 3878 | 281 | |
THC0290_2348 | CDS | 2717326:2717880 + | A1135 B380 C111 | 11.87 | 1.12 | Hypothetical protein precursor | 3881 | 2167 | |
THC0290_2349 | CDS | 2718086:2718493 - | A1187 B406 C122 | 13.82 | -1.09 | Probable lipoprotein precursor | 3884 | 2226 | |
THC0290_2350 | CDS | 2718538:2719650 - | A1187 B406 C122 | 14.35 | -1.07 | Probable lipoprotein precursor | 3885 | 2227 | |
THC0290_2359 | CDS | 2729659:2730384 - | A1768 B546 C143 | 11.14 | 1.57 | Putative transcriptional regulator | 3897 | 3640 | |
THC0290_tRNA_0049 | tRNA | 2730483:2730558 + | A1769 B546 C143 | 10.21 | 2.03 | transfer RNA-Phe | 3898 | 3757 | |
THC0290_2360 | CDS | 2730709:2731023 - | A1762 B546 C143 | 10.60 | 1.77 | Hypothetical protein | 3901 | 3428 | |
THC0290_N_1562 | intra | 2743411:2743569 - | A998 B317 C86 | 9.14 | 1.27 | new transcription segment | 3924 | 1953 | |
THC0290_N_1567 | 5prime | 2750626:2750789 - | A1490 B510 C143 | 10.50 | 1.06 | new transcription segment | 3936 | 2698 | |
THC0290_N_1569 | 3prime | 2751082:2751294 - | A646 B183 C44 | 12.61 | -1.13 | new transcription segment | 3938 | 1414 | |
THC0290_2379 | atpG | CDS | 2751295:2752155 - | A646 B183 C44 | 12.70 | -1.13 | ATP synthase gamma subunit | 3939 | 1415 |
THC0290_N_1570 | intra | 2752156:2752260 - | A646 B183 C44 | 12.03 | -1.29 | new transcription segment | 3940 | 1413 | |
THC0290_2380 | atpA | CDS | 2752261:2753838 - | A646 B183 C44 | 12.88 | -1.17 | ATP synthase alpha subunit | 3941 | 1416 |
THC0290_2381 | atpH | CDS | 2753853:2754386 - | A646 B183 C44 | 12.35 | -1.38 | ATP synthase delta subunit | 3942 | 1411 |
THC0290_2382 | atpF | CDS | 2754389:2754889 - | A646 B183 C44 | 12.88 | -1.05 | ATP synthase B subunit | 3943 | 1412 |
THC0290_N_1571 | intra | 2754890:2754974 - | A807 B244 C67 | 5.51 | -3.24 | new transcription segment | 3944 | 1704 | |
THC0290_N_1573 | Rfp87 | indep | 2762770:2763055 - | A1768 B546 C143 | 12.12 | 2.01 | new transcription segment | 3954 | 3595 |
THC0290_2396 | capK | CDS | 2768428:2769762 + | A1466 B506 C142 | 9.09 | 1.67 | Putative capsular polysaccharide biosynthesis protein CapK | 3966 | 2660 |
THC0290_2397 | CDS | 2769734:2770507 - | A580 B183 C44 | 8.32 | 1.15 | Glycosyl transferase, group 2 family protein | 3967 | 880 | |
THC0290_2405 | CDS | 2778394:2778873 - | A1432 B497 C142 | 10.89 | 1.62 | Probable transmembrane protein of unknown function | 3975 | 2616 | |
THC0290_2406 | CDS | 2779028:2779204 + | A1768 B546 C143 | 15.01 | 1.43 | Putative Sec-independent protein translocase (twin-arginine translocation protein) | 3976 | 3725 | |
THC0290_2410 | rpiB | CDS | 2783138:2783566 - | A1599 B535 C143 | 12.87 | 1.27 | Putative ribose 5-phosphate isomerase | 3981 | 2876 |