Differential expression: Growth on solid low nutrient medium [TYESA-0.5.vs.TYESA]

Differentially expressed genes in bacterial colonies grown in TYES-agar containing 1/2 nutrients concentration relative to standard concentration after 4 days at 18°C.

List of differentially expressed genomic elements (CDS and newly identified RNA elements).
Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.

Reference samples: TYESA_a, TYESA_b
Test samples: TYESA-0.5_a, TYESA-0.5_b

Locus Tag Name (v2) Feature type Location Clusters Base Expr. Delta Expr. Annotation Chromosome order Clusters order
THC0290_0001 rnr CDS 554:2728 + A1753 B546 C143 12.97 1.47 Ribonuclease R 1 3345
THC0290_0006 CDS 7285:7614 + A1751 B546 C143 15.46 1.06 Hypothetical protein precursor 11 3336
THC0290_N_0007 3prime 8197:8243 - A1309 B448 C131 5.82 3.78 new transcription segment 14 2451
THC0290_0025 sprB CDS 32571:43136 + A242 B86 C26 13.08 -1.00 Putative adhesin precursor SprB (modular protein) 47 315
THC0290_N_0024 intra 43137:43182 + A744 B215 C56 5.15 -2.33 new transcription segment 48 1618
THC0290_0029 elaA CDS 47729:48178 + A1768 B546 C143 10.67 1.68 ElaA protein 55 3677
THC0290_N_0029 Rfp3 indep 49141:49425 + A1768 B546 C143 10.62 2.30 new transcription segment 58 3650
THC0290_N_0030 5prime 49569:49619 + A1713 B546 C143 11.47 1.05 new transcription segment 59 3152
THC0290_N_0031 5prime 51080:51148 + A1543 B522 C143 9.38 1.33 new transcription segment 61 2786
THC0290_N_0037 Rfp4 indep 64013:64179 - A699 B199 C52 11.74 -2.54 new transcription segment 77 1517
THC0290_0041 CDS 64242:64637 - A700 B199 C52 10.26 -3.68 Cytochrome c551/c552 family protein 78 1523
THC0290_N_0039 Rfp5 indep 69429:69507 + A1768 B546 C143 9.72 2.33 new transcription segment 86 3616
THC0290_0048 hemE CDS 69952:70974 - A588 B183 C44 8.45 -1.46 Uroporphyrinogen decarboxylase 87 931
THC0290_N_0044 3prime 78908:78989 + A177 B64 C20 4.80 -1.83 new transcription segment 100 221
THC0290_0060 yqiW CDS 81475:81885 - A1768 B546 C143 14.72 1.15 Protein of unknown function YqiW 107 3611
THC0290_0063 CDS 85173:85406 + A1768 B546 C143 13.94 2.40 Hypothetical protein 113 3648
THC0290_0066 CDS 87514:87873 + A125 B52 C18 5.68 -2.81 Protein of unknown function 117 158
THC0290_0071 CDS 93117:94103 - A1052 B346 C102 11.44 1.31 Putative phosphoglycerate dehydrogenase 124 2017
THC0290_N_0056 5prime 94104:94163 - A1430 B497 C142 10.59 2.37 new transcription segment 125 2613
THC0290_0077 serS CDS 99742:101013 - A484 B172 C44 12.14 -1.22 Serine--tRNA ligase 136 645
THC0290_N_0061 intra 101014:101224 - A484 B172 C44 11.87 -1.18 new transcription segment 137 646
THC0290_0078 CDS 101225:102457 - A484 B172 C44 12.59 -1.10 Protein of unknown function precursor 138 643
THC0290_0079 CDS 102454:102894 - A484 B172 C44 13.03 -1.23 Protein of unknown function 139 644
THC0290_0080 CDS 102896:104074 - A484 B172 C44 13.10 -1.26 Probable lipoprotein precursor 140 642
THC0290_0081 mntH CDS 104165:106036 + A1089 B366 C107 12.51 -1.15 Probable manganese transport protein mntH 141 2108
THC0290_tRNA_0002 tRNA 109057:109130 - A1769 B546 C143 13.52 2.71 transfer RNA-Asn 149 3770
THC0290_N_0068 Rfp7 indep 113267:113949 + A1747 B546 C143 9.72 1.45 new transcription segment 155 3296
THC0290_N_0070 3prime 115149:115324 + A1825 B559 C145 5.79 2.16 new transcription segment 159 3918
THC0290_0093 feoA CDS 121549:121791 + A1494 B512 C143 12.72 1.37 Ferrous iron transport protein A 163 2709
THC0290_N_0075 Rfp8 indep 129929:130108 - A1768 B546 C143 8.45 3.49 new transcription segment 175 3608
THC0290_0110 CDS 140658:140933 - A1768 B546 C143 13.39 2.42 Putative plasmid stabilization system protein 189 3633
THC0290_0111 CDS 140930:141169 - A1768 B546 C143 13.95 3.08 Hypothetical protein 190 3634
THC0290_N_0088 intra 157872:157951 + A72 B35 C14 7.95 1.56 new transcription segment 209 83
THC0290_0126 CDS 158144:158260 + A71 B35 C14 8.75 1.17 Hypothetical protein 211 82
THC0290_N_0091 3prime 162010:162767 + A1820 B557 C145 5.85 -3.19 new transcription segment 218 3912
THC0290_N_0093 5prime 163655:163724 - A553 B182 C44 6.00 -4.29 new transcription segment 223 798
THC0290_0133 CDS 163777:164133 - A304 B113 C32 9.67 2.29 Protein of unknown function 224 389
THC0290_0134 CDS 164278:164808 + A1448 B502 C142 10.08 2.24 Probable transmembrane protein of unknown function 227 2637
THC0290_N_0106 3prime 181329:181404 + A1519 B521 C143 9.12 3.23 new transcription segment 251 2751
THC0290_0150 nadD CDS 183908:184489 - A74 B35 C14 10.57 1.89 Nicotinate-nucleotide adenylyltransferase 256 85
THC0290_tRNA_0004 tRNA 191804:191888 - A1768 B546 C143 11.61 2.47 transfer RNA-Leu 267 3657
THC0290_0157 CDS 194650:195750 + A1765 B546 C143 11.53 1.66 Probable transmembrane protein of unknown function 272 3507
THC0290_N_0131 3prime 208552:208636 - A958 B303 C83 7.03 2.06 new transcription segment 289 1898
THC0290_0166 CDS 210086:211081 + A1768 B546 C143 9.86 1.06 Protein of unknown function 291 3717
THC0290_0169 CDS 212865:213590 - A544 B180 C44 10.40 1.13 Glycosyl transferase, group 2 family protein 296 766
THC0290_0173 CDS 217635:218969 - A1083 B365 C107 15.08 -1.12 Probable cell surface protein (Leucine-rich repeat protein) precursor 301 2069
THC0290_0174 CDS 219283:220551 - A1083 B365 C107 14.83 -1.33 Probable cell surface protein (Leucine-rich repeat protein) precursor 302 2072
THC0290_0175 CDS 220567:221559 - A1083 B365 C107 14.95 -1.39 Probable cell surface protein (Leucine-rich repeat protein) 303 2073
THC0290_0176 CDS 221575:222702 - A1083 B365 C107 14.84 -1.18 Probable cell surface protein (Leucine-rich repeat protein) precursor 304 2070
THC0290_0182 CDS 230123:231112 - A1083 B365 C107 12.57 -3.16 Probable cell surface protein (Leucine-rich repeat protein) precursor 313 2056
THC0290_0183 CDS 231127:232047 - A1083 B365 C107 14.19 -2.56 Probable cell surface protein (Leucine-rich repeat protein) precursor 314 2057
THC0290_0184 CDS 232062:233117 - A1083 B365 C107 12.76 -2.47 Probable cell surface protein (Leucine-rich repeat protein) precursor 315 2058
THC0290_0185 CDS 233132:234121 - A1088 B365 C107 12.60 -3.10 Probable cell surface protein (Leucine-rich repeat protein) precursor 316 2088
THC0290_0210 pykA CDS 258953:260383 + A833 B252 C69 12.17 -1.04 Pyruvate kinase 360 1740
THC0290_N_0168 5prime 264212:264278 - A890 B276 C76 10.30 1.42 new transcription segment 368 1818
THC0290_0218 CDS 266397:266870 - A337 B126 C35 9.45 1.57 Protein of unknown function 372 437
THC0290_N_0169 Rfp17 indep 266572:266801 + A1747 B546 C143 10.34 1.86 new transcription segment 373 3298
THC0290_0235 CDS 286622:287854 + A1273 B425 C125 10.61 1.16 Probable M23/M37 family peptidase 401 2411
THC0290_0245 queA CDS 300280:301329 - A1745 B546 C143 14.06 1.15 S-adenosylmethionine:tRNA-ribosyltransferase- isomerase 418 3230
THC0290_N_0187 5prime 301330:301388 - A1745 B546 C143 13.93 1.90 new transcription segment 419 3231
THC0290_N_0190 5prime 304377:304524 - A357 B136 C39 9.17 -1.00 new transcription segment 427 458
THC0290_0263 metY CDS 319731:321023 - A726 B207 C54 7.02 2.35 Probable O-acetylhomoserine aminocarboxypropyltransferase 447 1585
THC0290_N_0198 Rfp20 indep 321293:321392 - A1435 B498 C142 7.10 3.53 new transcription segment 448 2619
THC0290_0266 CDS 323966:324199 - A1463 B506 C142 9.18 2.25 Transcriptional regulator, XRE family 454 2657
THC0290_0276 CDS 334046:334363 - A1709 B546 C143 15.60 1.79 Thioredoxin family protein 468 3133
THC0290_0282 CDS 337611:338546 + A991 B313 C85 5.36 -2.80 Probable outer membrane protein precursor 476 1946
THC0290_N_0210 5prime 344988:345117 - A855 B257 C70 12.83 2.42 new transcription segment 485 1778
THC0290_miscRNA_0001 misc_RNA 345053:345113 - A855 B257 C70 12.75 2.31 SAM-II long loop 486 1777
THC0290_0292 CDS 351317:352102 - A377 B143 C41 11.18 1.14 Protein of unknown function 493 482
THC0290_N_0216 3prime 355371:355427 + A1608 B535 C143 10.31 2.56 new transcription segment 497 2896
THC0290_0297 CDS 356020:356607 + A1243 B419 C125 10.05 1.03 Protein of unknown function 500 2328
THC0290_0305 CDS 371748:372044 + A1699 B546 C143 12.58 2.45 Thioredoxin family protein 511 3113
THC0290_0310 CDS 376525:379755 - A939 B296 C82 11.76 -1.36 Probable transmembrane protein of unknown function 518 1876
THC0290_N_0227 3prime-PT 380006:380541 + A1168 B401 C121 6.11 3.05 new transcription segment 521 2203
THC0290_0312 yggG CDS 381240:382067 + A1762 B546 C143 14.46 1.12 Putative secreted M48 family metalloprotease YggG precursor 523 3398
THC0290_0319 CDS 391228:391704 + A1404 B483 C139 9.47 1.02 Hypothetical protein 534 2578
THC0290_0340 ubiE CDS 417706:418437 - A68 B33 C14 10.53 1.60 Ubiquinone/menaquinone biosynthesis methyltransferase UbiE 565 78
THC0290_0343 gene 420014:422260 - A373 B141 C39 6.55 2.11 Protein of unknown function precursor (fragment) 570 477
THC0290_N_0259 5prime 437958:438171 - A1768 B546 C143 11.99 1.51 new transcription segment 590 3609
THC0290_0354 rpbA CDS 438303:438704 - A971 B307 C84 14.85 1.83 Putative RNA-binding protein RbpA 591 1918
THC0290_N_0263 3prime-PT 441466:441936 - A1760 B546 C143 9.67 1.07 new transcription segment 598 3375
THC0290_N_0267 5prime 446871:447017 + A1762 B546 C143 12.17 1.36 new transcription segment 607 3396
THC0290_N_0269 3prime-PT 448689:448837 - A1795 B549 C143 12.64 2.03 new transcription segment 612 3859
THC0290_0370 phoP CDS 453885:454571 + A1767 B546 C143 11.60 1.67 Two-component system response regulatory protein involved in phosphate regulation 619 3567
THC0290_0392 CDS 477872:478558 + A1711 B546 C143 10.29 1.07 Protein of unknown function precursor 649 3148
THC0290_0395 CDS 481952:482293 - A1413 B488 C140 4.90 1.90 Hypothetical protein 655 2588
THC0290_tRNA_0008 tRNA 483382:483469 - A1769 B546 C143 13.00 2.36 transfer RNA-Leu 658 3763
THC0290_N_0292 3prime 493173:493641 - A196 B70 C21 4.87 -1.61 new transcription segment 669 243
THC0290_0404 CDS 494527:495138 + A76 B35 C14 9.16 1.55 Protein of unknown function 673 87
THC0290_N_0298 3prime-PT 500352:500565 - A1760 B546 C143 9.63 1.94 new transcription segment 682 3376
THC0290_0411 CDS 502074:502397 - A386 B147 C41 8.13 1.14 Hypothetical protein precursor 689 494
THC0290_0412 CDS 502402:502551 - A386 B147 C41 8.95 2.23 Hypothetical protein 690 495
THC0290_0418 apaG CDS 509450:509836 - A1702 B546 C143 13.91 2.68 Protein ApaG 700 3120
THC0290_0427 CDS 519196:519870 - A1719 B546 C143 12.99 2.44 Probable transcriptional regulator, TetR family 710 3166
THC0290_miscRNA_0002 misc_RNA 524890:524985 + A1765 B546 C143 12.39 2.18 TPP riboswitch [THI element] 717 3484
THC0290_N_0312 intra 524986:525051 + A729 B209 C54 12.21 1.89 new transcription segment 718 1595
THC0290_0431 thiS CDS 525052:525258 + A730 B209 C54 10.22 1.83 Thiamine biosynthesis protein ThiS 719 1598
THC0290_0436 thiG CDS 529175:529945 + A728 B209 C54 6.59 -1.03 Thiazole biosynthesis protein ThiG 726 1594
THC0290_0438 thiF CDS 531214:531924 + A728 B209 C54 5.60 -1.72 Molybdopterin and thiamine biosynthesis protein 729 1591
THC0290_0439 pyrH CDS 531998:532705 + A302 B113 C32 12.41 1.59 UMP kinase 730 387
THC0290_N_0318 intra 533368:533474 + A1697 B546 C143 10.88 2.35 new transcription segment 732 3108
THC0290_0444 CDS 537060:539312 + A274 B100 C28 5.31 -2.08 Probable outer membrane protein precursor 739 357
THC0290_0448 CDS 543236:544480 - A1123 B375 C109 10.10 -1.12 Major facilitator superfamily (MFS) permease 745 2153
THC0290_0456 CDS 553650:554273 - A702 B199 C52 9.73 -1.89 Putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer 757 1530
THC0290_N_0334 5prime 561697:561746 - A1548 B523 C143 6.14 4.32 new transcription segment 769 2792
THC0290_0465 CDS 563356:563559 + A1753 B546 C143 14.17 1.44 Hypothetical protein 772 3354
THC0290_0470 CDS 567208:567639 + A1768 B546 C143 14.32 2.10 Protein of unknown function 783 3644
THC0290_tRNA_0011 tRNA 576781:576857 + A762 B226 C62 14.70 1.50 transfer RNA-Ala 795 1637
THC0290_0477 gene 581578:581844 - A1768 B546 C143 8.48 3.34 Truncated transposase IS256 family, N-terminal region 802 3618
THC0290_0482 CDS 586087:587670 + A1765 B546 C143 11.67 1.60 Transposase IS1182 family 809 3526
THC0290_N_0353 5prime 589527:589618 - A1768 B546 C143 13.74 1.60 new transcription segment 813 3613
THC0290_0499 CDS 604918:605220 + A1389 B477 C139 4.58 -1.00 Hypothetical protein 835 2561
THC0290_N_0362 5prime 608106:608358 - A1746 B546 C143 10.22 1.06 new transcription segment 838 3247
THC0290_N_0365 5prime 612761:612929 + A1762 B546 C143 11.22 1.94 new transcription segment 844 3416
THC0290_0506 CDS 613962:614243 + A1415 B488 C140 6.07 2.99 Protein of unknown function 847 2590
THC0290_0508 CDS 614830:615714 - A1747 B546 C143 13.50 1.07 Transposase IS982 family 850 3255
THC0290_N_0368 repeated_region 615707:616002 + A1768 B546 C143 10.78 1.84 new transcription segment 851 3621
THC0290_0509 gene 616003:617439 + A1253 B419 C125 8.09 1.34 Truncated protein of unknown function, C-terminal region 852 2376
THC0290_N_0375 repeated_region 634732:634818 + A1837 B563 C145 5.19 2.30 new transcription segment 868 3930
THC0290_0519 CDS 634807:635154 - A1765 B546 C143 12.26 1.04 Conserved protein of unknown function 869 3504
THC0290_0520 CDS 635151:635951 - A1765 B546 C143 12.59 1.74 Probable transcriptional regulator 870 3505
THC0290_0526 CDS 642217:643776 + A1765 B546 C143 11.51 1.52 Transposase IS1182 family 878 3529
THC0290_N_0390 Rfp30 indep 658610:658815 + A1762 B546 C143 11.77 2.36 new transcription segment 906 3412
THC0290_0544 CDS 662247:663131 + A1747 B546 C143 13.44 1.14 Transposase IS982 family 913 3257
THC0290_0545 CDS 663927:664523 - A1739 B546 C143 6.11 2.41 Hypothetical protein 914 3214
THC0290_N_0403 intra 681237:681325 - A168 B62 C19 7.46 -2.79 new transcription segment 937 209
THC0290_0560 CDS 681664:682242 - A1210 B415 C124 9.11 -1.63 Protein of unknown function 939 2270
THC0290_0594 CDS 729775:729990 + A599 B183 C44 8.31 -1.11 Conserved protein of unknown function 1002 1021
THC0290_0601 CDS 737937:739331 + A1699 B546 C143 9.62 1.83 Probable lipoprotein precursor 1014 3114
THC0290_0605 CDS 740986:741660 - A1691 B546 C143 11.16 1.02 Protein of unknown function 1021 3099
THC0290_0611 CDS 745511:745864 - A1762 B546 C143 14.50 1.25 Protein of unknown function 1029 3392
THC0290_0616 murI CDS 751461:752240 - A25 B13 C6 9.45 1.50 Glutamate racemase 1039 31
THC0290_N_0452 5prime 759692:759919 - A1768 B546 C143 11.74 1.76 new transcription segment 1050 3636
THC0290_0632 CDS 767506:767874 + A1745 B546 C143 13.82 2.71 Putative Sec-independent protein translocase (twin-arginine translocation protein) 1068 3239
THC0290_0637 CDS 771307:772284 + A1448 B502 C142 10.53 1.29 Polyprenyl synthetase 1077 2636
THC0290_0642 CDS 776332:777606 + A1767 B546 C143 10.71 1.02 Protein of unknown function precursor 1082 3568
THC0290_N_0466 5prime 777700:777762 + A553 B182 C44 5.55 -3.20 new transcription segment 1083 799
THC0290_N_0472 3prime 782817:782865 + A1354 B468 C136 6.29 -1.70 new transcription segment 1095 2513
THC0290_N_0474 intra 789765:789827 + A465 B169 C44 5.75 -3.58 new transcription segment 1104 607
THC0290_0679 CDS 816190:816630 + A85 B40 C15 5.70 -1.95 Probable transmembrane protein of unknown function 1145 101
THC0290_0692 CDS 826788:828029 - A1747 B546 C143 10.87 1.45 Probable ABC-type transport system, permease component 1162 3294
THC0290_0696 aroQ CDS 831952:832365 + A1592 B534 C143 10.49 1.22 3-dehydroquinate dehydratase 1171 2865
THC0290_0702 CDS 839661:839945 - A1709 B546 C143 12.36 1.07 Hypothetical protein 1182 3134
THC0290_N_0510 Rfp36 indep 840044:840245 - A1244 B419 C125 8.50 1.10 new transcription segment 1183 2343
THC0290_0707 CDS 844456:845016 + A1762 B546 C143 13.57 1.59 Putative transcriptional regulator 1190 3410
THC0290_N_0517 3prime 845017:845453 + A1643 B540 C143 9.57 1.10 new transcription segment 1193 2986
THC0290_0721 rmuC CDS 857058:858404 + A1473 B507 C142 10.38 1.05 DNA recombination protein RmuC 1213 2670
THC0290_0734 miaB CDS 870961:872406 - A1747 B546 C143 12.77 1.53 Probable TRNA-i(6)A37 modification enzyme MiaB 1237 3292
THC0290_0745 CDS 884948:885376 - A1768 B546 C143 11.99 1.92 Protein of unknown function 1254 3679
THC0290_N_0545 3prime 887358:887776 + A574 B183 C44 4.67 -1.53 new transcription segment 1258 850
THC0290_0753 CDS 895795:896361 + A1459 B505 C142 11.53 1.20 Protein of unknown function 1276 2653
THC0290_N_0554 intra 896362:896546 + A1373 B472 C137 9.92 -1.18 new transcription segment 1277 2540
THC0290_N_0556 5prime 900417:900873 + A1604 B535 C143 12.42 1.48 new transcription segment 1281 2891
THC0290_0760 CDS 906571:907191 - A77 B35 C14 8.81 1.16 Protein of unknown function 1290 89
THC0290_0775 CDS 926006:926245 + A1768 B546 C143 11.84 2.77 Hypothetical protein 1317 3661
THC0290_0782 CDS 930615:931109 - A1696 B546 C143 10.44 1.11 RNA polymerase ECF-type sigma factor 1328 3106
THC0290_0788 CDS 938186:938767 + A1795 B549 C143 11.83 1.64 Protein of unknown function precursor 1337 3853
THC0290_0793 CDS 943571:944119 - A1088 B365 C107 11.72 -1.44 Probable transmembrane protein of unknown function 1347 2094
THC0290_0794 fhuA CDS 944125:946380 - A1088 B365 C107 12.62 -1.38 Probable TonB-dependent outer membrane ferrichrome-iron receptor precursor FhuA 1348 2095
THC0290_N_0588 Rfp41 indep 955247:955570 + A1838 B563 C145 6.69 1.89 new transcription segment 1362 3932
THC0290_0801 CDS 955843:956211 - A370 B141 C39 10.69 1.22 Protein of unknown function 1364 472
THC0290_0806 pcm CDS 960228:960869 + A311 B117 C33 10.43 1.48 Protein-L-isoaspartate(D-aspartate) O-methyltransferase 1370 396
THC0290_N_0592 3prime 962079:962138 + A1190 B409 C123 8.04 -1.54 new transcription segment 1373 2230
THC0290_0823 gldI CDS 982263:982829 + A887 B276 C76 11.41 1.35 Gliding motility lipoprotein precursor GldI 1399 1814
THC0290_0829 CDS 988595:989146 + A1762 B546 C143 11.95 1.76 Probable ribosomal-protein-amino-adic N-acetyltransferase 1406 3411
THC0290_0843 wbsE CDS 1004237:1005373 - A1465 B506 C142 8.23 1.61 Putative glycosyl transferase WbsE 1430 2659
THC0290_0848 yydA CDS 1008755:1009228 - A1619 B535 C143 9.98 1.22 Protein of unknown function YydA 1436 2926
THC0290_0850 yjeB CDS 1009520:1009939 - A894 B277 C76 7.86 1.87 Protein of unknown function YjeB 1438 1822
THC0290_0856 CDS 1016592:1017284 - A1762 B546 C143 13.31 2.04 Two-component system response regulatory protein, LytTR family 1448 3418
THC0290_0873 CDS 1030281:1030799 - A1751 B546 C143 12.95 1.20 Protein of unknown function 1471 3337
THC0290_0880 coaE CDS 1037592:1038176 + A1765 B546 C143 11.97 1.21 Dephospho-CoA kinase 1480 3560
THC0290_0881 rprX CDS 1038245:1039828 + A1765 B546 C143 13.36 1.59 Two-component system sensor histidine kinase RprX 1482 3521
THC0290_N_0634 3prime 1040534:1040595 + A1312 B451 C132 5.26 -2.18 new transcription segment 1484 2454
THC0290_N_0639 intra 1048848:1048930 + A646 B183 C44 6.37 -4.94 new transcription segment 1498 1406
THC0290_0893 CDS 1052483:1053235 + A1753 B546 C143 13.39 2.13 Protein of unknown function precursor 1503 3355
THC0290_0895 CDS 1054120:1055541 + A1292 B436 C127 12.68 -1.03 Probable metallo-beta-lactamase 1506 2430
THC0290_0896 CDS 1055511:1055870 + A1292 B436 C127 12.12 -1.35 Rhodanese-like domain protein 1507 2431
THC0290_0897 CDS 1055873:1056070 + A1292 B436 C127 11.91 -1.39 Hypothetical transmembrane protein 1508 2432
THC0290_0898 CDS 1056073:1056375 + A1292 B436 C127 11.75 -1.35 Thioredoxin family protein 1509 2433
THC0290_0904 npdA CDS 1063992:1064684 + A1602 B535 C143 10.94 1.47 NAD-dependent deacetylase 1518 2881
THC0290_0913 pyrR1 CDS 1074804:1075340 + A1566 B528 C143 12.72 1.19 Bifunctional protein : pyrimidine operon regulatory protein and uracil phosphoribosyltransferase 1532 2834
THC0290_tRNA_0017 tRNA 1081988:1082061 + A1769 B546 C143 13.85 2.80 transfer RNA-Thr 1548 3766
THC0290_0925 CDS 1086697:1087044 + A1496 B512 C143 12.70 1.29 Protein of unknown function 1553 2712
THC0290_N_0658 3prime 1087688:1087763 - A1700 B546 C143 7.50 3.98 new transcription segment 1556 3116
THC0290_0927 CDS 1087764:1088015 - A1768 B546 C143 12.29 2.05 Probable ferredoxin 1558 3652
THC0290_0929 corA CDS 1089573:1090643 + A77 B35 C14 9.97 1.29 Magnesium and cobalt transport protein CorA 1561 90
THC0290_0939 rlmF CDS 1106178:1107122 - A106 B45 C16 9.38 1.34 Ribosomal RNA large subunit methyltransferase F 1581 132
THC0290_0959 CDS 1130552:1130911 - A1781 B546 C143 11.28 1.16 Probable transcriptional regulator 1617 3825
THC0290_N_0688 3prime 1134356:1134819 + A1820 B557 C145 6.23 -3.02 new transcription segment 1625 3913
THC0290_0965 CDS 1135455:1135643 - A1769 B546 C143 10.03 1.86 Hypothetical protein 1627 3791
THC0290_0966 CDS 1135889:1136275 + A1758 B546 C143 8.19 2.38 Protein of unknown function 1628 3364
THC0290_0969 CDS 1138406:1138603 + A1751 B546 C143 14.58 1.91 Protein of unknown function 1632 3335
THC0290_0970 oxyR CDS 1138817:1139758 - A1861 B573 C149 9.09 1.14 Redox-sensitive transcriptional activator OxyR 1634 3960
THC0290_0974 CDS 1143261:1143719 - A347 B129 C35 12.04 1.13 Probable transcriptional regulator, AsnC family 1640 447
THC0290_0977 CDS 1147602:1149359 - A1795 B549 C143 8.64 1.15 Esterase/lipase/thioesterase family protein precursor 1647 3864
THC0290_0979 CDS 1152256:1152894 + A1864 B574 C149 14.92 1.52 Probable peroxiredoxin 1650 3964
THC0290_0986 CDS 1159706:1160173 - A884 B274 C75 11.27 1.54 Probable transcriptional regulator, MarR-family 1661 1810
THC0290_0994 lon CDS 1168825:1171275 + A837 B254 C69 11.37 -1.29 S16 family, ATP-dependent endopeptidase La 1672 1744
THC0290_1006 CDS 1184239:1184796 - A1473 B507 C142 9.32 1.28 LemA family protein 1694 2668
THC0290_1017 kdpA CDS 1196669:1198390 + A1628 B539 C143 9.72 -1.26 Potassium-transporting ATPase A subunit 1713 2942
THC0290_1024 CDS 1206629:1207081 - A1768 B546 C143 11.73 2.38 Probable lipoprotein precursor 1723 3628
THC0290_1027 gene 1208124:1208453 - A1452 B504 C142 8.86 2.21 Conserved membrane protein of unknown function (fragment) 1726 2644
THC0290_N_0731 intra 1210556:1210669 - A505 B177 C44 5.60 -2.53 new transcription segment 1733 675
THC0290_1033 yncA CDS 1210670:1211167 - A1475 B507 C142 9.83 1.96 Probable phosphinothricin N-acetyltransferase YncA 1734 2673
THC0290_1035 CDS 1212972:1213316 + A1762 B546 C143 14.62 1.90 Protein of unknown function 1736 3394
THC0290_N_0733 3prime 1213317:1213392 + A1762 B546 C143 10.13 2.41 new transcription segment 1737 3413
THC0290_1036 fjo10 CDS 1213453:1213833 - A1768 B546 C143 14.39 1.82 Probable lipoprotein precursor Fjo10. Putative cation transport ATPase 1739 3724
THC0290_1045 ssb CDS 1221567:1221989 + A1437 B499 C142 10.71 1.18 Single-strand DNA-binding protein Ssb 1754 2621
THC0290_N_0742 Rfp48 indep 1225076:1225422 + A1769 B546 C143 7.96 1.79 new transcription segment 1759 3742
THC0290_1055 CDS 1233132:1235285 + A556 B183 C44 7.80 -1.46 Probable outer membrane protein precursor 1770 805
THC0290_1056 CDS 1235407:1236027 + A556 B183 C44 10.35 -1.24 Protein of unknown function 1771 806
THC0290_N_0747 intra 1236028:1236085 + A556 B183 C44 9.67 -1.36 new transcription segment 1772 804
THC0290_N_0752 3prime 1249246:1250138 + A124 B51 C18 5.45 -1.94 new transcription segment 1791 157
THC0290_1086 ddpX CDS 1266894:1267535 + A1361 B469 C136 8.96 1.52 D-alanyl-D-alanine dipeptidase 1813 2522
THC0290_N_0759 3prime 1267045:1267535 - A189 B69 C21 5.42 2.15 new transcription segment 1814 235
THC0290_1106 CDS 1294577:1294918 - A1614 B535 C143 12.51 1.56 Probable arsenate reductase (glutaredoxin) 1853 2910
THC0290_1114 CDS 1299960:1300283 - A1721 B546 C143 14.74 2.20 Probable transcriptional regulator, ArsR family 1864 3174
THC0290_tRNA_0018 tRNA 1307576:1307663 + A1769 B546 C143 15.02 2.92 transfer RNA-Ser 1873 3781
THC0290_1121 CDS 1307925:1309172 + A1519 B521 C143 6.96 2.32 Probable transposase 1875 2750
THC0290_1128 CDS 1316964:1317203 - A1769 B546 C143 10.44 1.74 Hypothetical protein 1884 3792
THC0290_1134 gene 1325575:1327311 + A1734 B546 C143 8.35 1.90 Truncated peptidase precursor, S9 family, C-terminal region 1892 3206
THC0290_1138 CDS 1330262:1330645 - A1795 B549 C143 8.91 2.09 Hypothetical protein 1896 3857
THC0290_1140 gene 1331524:1333155 + A1333 B461 C133 5.28 2.12 Truncated protein, C-terminal region 1898 2482
THC0290_1144 CDS 1335777:1336403 + A1525 B521 C143 5.66 3.01 Protein of unknown function 1902 2758
THC0290_1147 gene 1337695:1338009 + A1745 B546 C143 6.89 2.15 Truncated protein, C-terminal region 1905 3234
THC0290_1148 gene 1338006:1338212 + A960 B304 C83 8.15 2.49 Truncated protein, N-terminal region 1906 1900
THC0290_1152 CDS 1339611:1343918 + A1734 B546 C143 7.74 1.40 Probable hybrid two-component system sensor histidine kinase and response regulator receiver 1910 3207
THC0290_1157 CDS 1348785:1349876 + A1523 B521 C143 5.42 2.69 Putative transporting permease 1915 2756
THC0290_1164 CDS 1354948:1356420 + A1745 B546 C143 8.75 1.55 Outer membrane protein precursor, OmpA family 1922 3241
THC0290_1165 CDS 1356605:1357303 + A1705 B546 C143 6.93 1.85 Probable lipoprotein precursor 1923 3123
THC0290_1187 CDS 1373220:1373978 + A1003 B318 C86 6.58 1.03 Probable ABC-type transport system, permease component 1946 1958
THC0290_1199 CDS 1384160:1384657 + A1746 B546 C143 7.72 1.96 Protein of unknown function precursor 1959 3245
THC0290_1203 CDS 1386310:1386462 + A1311 B450 C132 6.03 -4.13 Conserved exported protein of unknown function 1963 2453
THC0290_1205 CDS 1386748:1387101 + A1768 B546 C143 8.97 1.20 Hypothetical protein 1965 3690
THC0290_1206 CDS 1387098:1387430 + A1380 B474 C137 5.91 -2.97 Hypothetical protein 1966 2548
THC0290_tRNA_0020 tRNA 1406725:1406801 + A762 B226 C62 14.68 1.55 transfer RNA-Ala 1988 1636
THC0290_1233 CDS 1426680:1427324 + A1294 B437 C127 11.30 -2.26 Probable peroxiredoxin 2015 2435
THC0290_1236 CDS 1428816:1429214 - A1793 B549 C143 10.94 1.49 Cytochrome c family protein 2018 3849
THC0290_1243 CDS 1435961:1436539 - A707 B201 C52 5.53 -3.30 Probable transcriptional regulator, TetR family 2026 1537
THC0290_N_0806 Rfp55 indep 1436072:1436459 + A1768 B546 C143 8.31 1.12 new transcription segment 2027 3667
THC0290_N_0814 Rfp56 indep 1444415:1444724 - A1768 B546 C143 9.03 1.98 new transcription segment 2041 3700
THC0290_1252 CDS 1446225:1446704 - A1762 B546 C143 14.88 1.58 Universal stress protein, UspA family 2044 3425
THC0290_N_0820 3prime 1465659:1465713 - A628 B183 C44 5.15 -2.16 new transcription segment 2061 1352
THC0290_1269 CDS 1468395:1468811 - A1768 B546 C143 12.86 1.96 MutT/nudix family protein 2067 3635
THC0290_1270 CDS 1468900:1469292 + A1615 B535 C143 11.14 1.76 Protein of unknown function 2068 2917
THC0290_1278 hisG CDS 1475685:1476542 - A709 B202 C53 5.38 -1.86 ATP phosphoribosyltransferase 2079 1543
THC0290_1279 CDS 1476834:1477277 - A76 B35 C14 9.23 1.77 Probable transmembrane protein of unknown function 2082 88
THC0290_1282 CDS 1481726:1482610 - A1747 B546 C143 13.46 1.04 Transposase IS982 family 2087 3258
THC0290_N_0844 Rfp59 indep 1505987:1506397 - A1768 B546 C143 6.70 1.89 new transcription segment 2126 3680
THC0290_1312 CDS 1513488:1514048 - A1745 B546 C143 10.07 1.65 Protein of unknown function 2136 3233
THC0290_1314 CDS 1514838:1515227 - A1747 B546 C143 11.92 1.15 Probable transmembrane protein of unknown function 2138 3250
THC0290_1325 CDS 1529121:1529963 + A319 B119 C33 9.26 1.86 Probable transcriptional regulator, AraC family 2149 405
THC0290_N_0847 intra 1529964:1530048 + A319 B119 C33 9.61 1.38 new transcription segment 2150 406
THC0290_1335 CDS 1539932:1540345 + A1449 B502 C142 11.48 1.07 Probable two-component system response regulatory protein 2161 2640
THC0290_N_0850 3prime 1546729:1546916 + A179 B65 C21 5.30 -2.85 new transcription segment 2169 223
THC0290_1344 CDS 1552913:1553296 - A1795 B549 C143 11.17 2.00 Transposase IS1 family 2172 3856
THC0290_1355 CDS 1564986:1566110 + A1487 B509 C142 10.64 1.25 Protein of unknown function 2191 2692
THC0290_1356 CDS 1566126:1566971 + A1020 B327 C89 10.25 1.09 Protein of unknown function 2192 1975
THC0290_1358 ung CDS 1568078:1568740 - A1768 B546 C143 10.61 1.48 Uracil-DNA glycosylase 2197 3718
THC0290_1368 tal CDS 1580392:1581048 - A1745 B546 C143 12.86 1.56 Transaldolase 2211 3237
THC0290_N_0868 intra 1581049:1581297 - A1745 B546 C143 10.97 1.76 new transcription segment 2212 3236
THC0290_1369 CDS 1581298:1582101 - A636 B183 C44 6.69 -2.82 Probable short-chain type dehydrogenase 2214 1373
THC0290_miscRNA_0045 Rfp61 misc_RNA 1582336:1582433 - A1769 B546 C143 14.15 2.95 Bacterial small signal recognition particle RNA 2217 3762
THC0290_N_0870 3prime 1583575:1584025 + A1701 B546 C143 10.06 1.76 new transcription segment 2219 3117
THC0290_tRNA_0023 tRNA 1604080:1604156 - A762 B226 C62 14.82 1.51 transfer RNA-Ala 2255 1639
THC0290_N_0895 5prime 1623118:1623309 - A68 B33 C14 9.76 1.23 new transcription segment 2282 79
THC0290_N_0896 intra 1625494:1625575 + A1669 B542 C143 9.51 1.14 new transcription segment 2284 3054
THC0290_N_0899 3prime-PT 1626413:1626925 + A1819 B557 C145 5.11 -2.20 new transcription segment 2288 3910
THC0290_N_0904 5prime 1637059:1637201 - A1768 B546 C143 13.39 2.15 new transcription segment 2301 3639
THC0290_N_0905 5prime 1637088:1637440 + A1563 B526 C143 13.79 1.22 new transcription segment 2302 2829
THC0290_1422 CDS 1646261:1647379 + A530 B180 C44 8.88 1.01 Protein of unknown function 2313 721
THC0290_N_0910 3prime-PT 1651904:1652210 - A1745 B546 C143 11.05 2.56 new transcription segment 2318 3240
THC0290_N_0923 3prime 1669052:1669388 + A1659 B542 C143 8.05 -1.41 new transcription segment 2340 3032
THC0290_N_0928 5prime 1672904:1672948 - A1331 B461 C133 5.78 3.31 new transcription segment 2349 2479
THC0290_1441 speE CDS 1672956:1673624 + A1768 B546 C143 10.90 1.25 Putative spermidine synthase 2350 3701
THC0290_1444 CDS 1675692:1676540 - A1762 B546 C143 12.92 1.27 Protein of unknown function 2355 3424
THC0290_N_0937 5prime 1681345:1681454 - A1762 B546 C143 10.79 2.48 new transcription segment 2368 3420
THC0290_N_0939 3prime 1683788:1684364 - A301 B112 C32 7.31 1.52 new transcription segment 2374 386
THC0290_N_0944 intra 1690140:1690189 - A1768 B546 C143 10.11 2.65 new transcription segment 2384 3643
THC0290_N_0946 intra 1695609:1695759 - A611 B183 C44 9.27 -1.10 new transcription segment 2389 1287
THC0290_1480 CDS 1718908:1719456 - A303 B113 C32 9.55 1.39 Protein of unknown function 2423 388
THC0290_N_0969 5prime 1724967:1725040 - A1745 B546 C143 11.10 1.37 new transcription segment 2435 3242
THC0290_N_0972 intra 1727896:1728001 + A630 B183 C44 8.81 -1.08 new transcription segment 2442 1362
THC0290_N_0978 5prime 1732259:1732334 - A1762 B546 C143 9.96 1.24 new transcription segment 2452 3417
THC0290_1495 CDS 1732704:1735469 + A1436 B499 C142 6.97 1.65 Protein of unknown function 2453 2620
THC0290_N_0979 3prime 1738057:1738101 + A93 B43 C16 5.48 -3.08 new transcription segment 2455 109
THC0290_1499 CDS 1741164:1741574 + A1768 B546 C143 13.71 1.90 Probable transmembrane protein of unknown function 2460 3649
THC0290_N_0988 3prime 1750802:1750865 - A509 B179 C44 11.27 -1.03 new transcription segment 2474 680
THC0290_1513 CDS 1758332:1759009 + A1433 B497 C142 8.63 1.45 Probable transcriptional regulatory protein, Crp/Fnr family 2482 2617
THC0290_1517 gene 1760953:1761909 + A1416 B488 C140 5.60 2.99 Conserved protein of unknown function 2487 2597
THC0290_N_0993 3prime 1769587:1769637 + A1331 B461 C133 5.04 1.89 new transcription segment 2493 2480
THC0290_1522 CDS 1769814:1770386 - A852 B256 C70 8.93 1.55 Protein of unknown function related to microcin resistance protein McbG 2494 1773
THC0290_tRNA_0028 tRNA 1770433:1770509 - A1769 B546 C143 10.37 2.80 transfer RNA-Arg 2495 3771
THC0290_N_1003 intra 1788164:1788342 - A924 B287 C78 9.57 -1.42 new transcription segment 2516 1858
THC0290_N_1005 5prime 1789837:1789892 + A75 B35 C14 13.17 1.57 new transcription segment 2519 86
THC0290_1538 CDS 1792954:1793694 - A1638 B540 C143 13.44 1.26 Probable lipoprotein precursor 2527 2969
THC0290_1542 CDS 1796696:1797148 + A1765 B546 C143 12.14 1.43 Protein of unknown function 2535 3480
THC0290_N_1013 3prime 1797054:1798144 - A1753 B546 C143 9.94 1.63 new transcription segment 2536 3349
THC0290_N_1014 Rfp66 indep 1798145:1798224 - A1768 B546 C143 9.94 2.36 new transcription segment 2538 3594
THC0290_N_1015 intra 1798910:1798967 + A831 B252 C69 5.56 -3.41 new transcription segment 2540 1738
THC0290_N_1017 intra 1800118:1800206 + A839 B254 C69 8.69 -1.14 new transcription segment 2542 1748
THC0290_1556 CDS 1810067:1810495 + A1762 B546 C143 13.07 1.87 Protein of unknown function 2565 3397
THC0290_N_1032 3prime 1811572:1811634 - A1326 B458 C133 5.63 3.19 new transcription segment 2569 2472
THC0290_1572 fdx1 CDS 1830238:1830588 - A1768 B546 C143 14.40 1.46 Ferredoxin 2597 3641
THC0290_1576 CDS 1834022:1834672 + A1602 B535 C143 12.18 1.22 Protein of unknown function 2603 2884
THC0290_1578 CDS 1835452:1835757 + A1768 B546 C143 10.07 1.57 Hypothetical transmembrane protein 2607 3646
THC0290_1579 CDS 1835787:1836098 - A1350 B467 C136 11.85 -1.39 Protein of unknown function 2608 2505
THC0290_1580 folE1 CDS 1836146:1836817 - A1350 B467 C136 12.52 -1.27 GTP cyclohydrolase I 2609 2506
THC0290_1581 mrsA CDS 1836820:1837458 - A1751 B546 C143 14.19 1.05 Protein-methionine-S-oxide reductase MsrA 2610 3334
THC0290_1582 CDS 1837569:1838231 + A1448 B502 C142 11.72 1.96 Probable ABC-type transport system, ATPase component 2611 2635
THC0290_1586 CDS 1842055:1842597 + A1765 B546 C143 10.91 2.38 RNA polymerase ECF-type sigma factor 2618 3498
THC0290_1587 CDS 1842628:1843008 + A1765 B546 C143 11.64 2.20 Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor 2619 3499
THC0290_1588 CDS 1843019:1843477 + A1765 B546 C143 12.24 1.69 Protein of unknown function precursor, putative sensor of anti-sigma and ECF sigma factor 2620 3500
THC0290_N_1054 3prime 1843478:1843604 + A1765 B546 C143 11.58 1.51 new transcription segment 2621 3497
THC0290_1590 gene 1844029:1844682 - A1765 B546 C143 10.16 1.19 Truncated protein, N-terminal region (fragment) 2624 3488
THC0290_N_1064 intra 1857289:1857455 - A585 B183 C44 5.35 2.22 new transcription segment 2640 910
THC0290_N_1068 intra 1862203:1863166 - A1009 B321 C87 9.17 1.45 new transcription segment 2649 1964
THC0290_1615 CDS 1873536:1873964 + A1306 B445 C130 11.08 1.31 Protein of unknown function 2668 2448
THC0290_1618 CDS 1879036:1879245 + A1250 B419 C125 7.33 2.12 Hypothetical protein 2675 2364
THC0290_N_1082 intra 1882842:1883282 - A1768 B546 C143 11.30 1.43 new transcription segment 2681 3651
THC0290_N_1084 5prime 1885800:1885859 - A1730 B546 C143 10.69 2.64 new transcription segment 2686 3194
THC0290_1626 CDS 1887285:1887971 + A765 B228 C63 11.25 1.08 Probable ABC-type transport system, ATPase component 2690 1650
THC0290_N_1091 Rfp70 indep 1894584:1894642 + A1769 B546 C143 8.07 2.59 new transcription segment 2700 3737
THC0290_1638 argK CDS 1899746:1900837 + A1792 B549 C143 10.05 1.03 Periplasmic transport binding protein kinase ArgK 2712 3848
THC0290_1644 CDS 1907277:1908149 - A1635 B540 C143 11.18 1.66 Protein of unknown function 2723 2964
THC0290_N_1101 5prime 1908150:1908264 - A1635 B540 C143 10.12 1.07 new transcription segment 2724 2966
THC0290_1653 CDS 1917528:1918436 - A1763 B546 C143 11.00 1.07 Probable transmembrane protein of unknown function, putative anti ECF-type sigma factor 2741 3434
THC0290_1654 CDS 1918439:1918975 - A1763 B546 C143 11.28 1.56 RNA polymerase ECF-type sigma factor 2742 3435
THC0290_1670 CDS 1935401:1935784 + A77 B35 C14 11.54 2.06 Protein of unknown function 2767 91
THC0290_1675 CDS 1943090:1944706 - A1055 B348 C104 11.53 4.25 Probable asparagine synthetase [glutamine-hydrolyzing] 2775 2022
THC0290_1676 CDS 1944906:1945355 - A1768 B546 C143 10.72 2.07 Protein of unknown function 2777 3630
THC0290_N_1128 5prime 1945356:1945410 - A1768 B546 C143 10.87 2.56 new transcription segment 2778 3631
THC0290_1679 phuR CDS 1947394:1949601 + A1209 B415 C124 9.67 -2.03 Probable TonB-dependent outer membrane hemin receptor precursor PhuR 2783 2267
THC0290_N_1131 3prime 1949602:1950013 + A1209 B415 C124 5.94 -3.92 new transcription segment 2784 2268
THC0290_1684 CDS 1957116:1957427 - A349 B129 C35 12.02 1.16 Rhodanese-related sulfurtransferase 2794 449
THC0290_N_1137 5prime 1957428:1957643 - A350 B129 C35 12.09 1.25 new transcription segment 2795 450
THC0290_N_1138 3prime 1959433:1959477 + A1720 B546 C143 11.76 2.31 new transcription segment 2799 3173
THC0290_1691 trpC CDS 1962890:1963672 + A718 B205 C53 9.06 -1.37 Indole-3-glycerol phosphate synthase 2807 1561
THC0290_1695 CDS 1966777:1967400 + A682 B191 C48 13.00 1.09 Probable transcriptional regulator, TetR family 2815 1475
THC0290_1697 CDS 1968717:1969796 + A683 B191 C48 12.26 -1.22 Probable membrane fusion efflux protein 2817 1480
THC0290_N_1145 intra 1969797:1970021 + A683 B191 C48 11.04 -1.32 new transcription segment 2818 1478
THC0290_1698 CDS 1970022:1971608 + A683 B191 C48 10.98 -1.33 Major facilitator superfamily (MFS) permease 2820 1481
THC0290_N_1146 intra 1971609:1971753 + A683 B191 C48 10.56 -1.43 new transcription segment 2821 1479
THC0290_N_1150 intra 1977128:1977205 - A1768 B546 C143 13.10 1.55 new transcription segment 2830 3702
THC0290_1704 CDS 1977206:1977442 - A1768 B546 C143 13.51 2.52 Hypothetical transmembrane protein 2831 3662
THC0290_N_1152 Rfp76 indep 1982930:1983021 - A1769 B546 C143 10.84 4.23 new transcription segment 2838 3772
THC0290_N_1161 Rfp78 indep 1995370:1995588 + A1768 B546 C143 10.73 2.06 new transcription segment 2856 3686
THC0290_tRNA_0031 tRNA 1999846:1999922 - A762 B226 C62 14.71 1.50 transfer RNA-Ala 2859 1640
THC0290_tRNA_0033 tRNA 2003330:2003404 - A1769 B546 C143 13.11 3.06 transfer RNA-Glu 2865 3759
THC0290_tRNA_0034 tRNA 2003436:2003507 - A1769 B546 C143 12.89 2.98 transfer RNA-Glu 2866 3760
THC0290_N_1170 3prime 2009459:2009676 - A1548 B523 C143 6.72 2.08 new transcription segment 2875 2793
THC0290_N_1172 5prime 2010199:2010299 + A1699 B546 C143 10.21 3.45 new transcription segment 2877 3111
THC0290_1734 (dciA) CDS 2022210:2022506 - A1768 B546 C143 11.14 1.29 Involved in the control of replication initiation 2892 3675
THC0290_1735 CDS 2022508:2022927 - A1768 B546 C143 11.82 1.69 Protein of unknown function 2893 3676
THC0290_1737 bsaA CDS 2024278:2024871 - A1511 B519 C143 12.13 -1.18 Glutathione peroxidase BsaA 2897 2732
THC0290_1745 CDS 2033820:2034134 - A1768 B546 C143 11.59 1.95 Probable transcriptional regulator, HxlR family 2908 3599
THC0290_N_1189 intra 2042719:2042827 - A992 B313 C85 6.41 -2.11 new transcription segment 2928 1947
THC0290_1760 CDS 2044991:2045761 - A348 B129 C35 11.11 1.09 Probable DNA polymerase III subunit 2933 448
THC0290_tRNA_0037 tRNA 2049271:2049353 + A1769 B546 C143 10.67 2.49 transfer RNA-Leu 2944 3756
THC0290_1774 CDS 2056576:2057085 - A1392 B478 C139 11.82 1.69 RNA polymerase ECF-type sigma factor 2955 2566
THC0290_1777 gpmA CDS 2060543:2061067 - A530 B180 C44 5.72 1.39 Phosphoglycerate mutase 2960 720
THC0290_1787 lipA CDS 2070093:2070965 + A1600 B535 C143 12.86 1.02 Lipoyl synthase 2973 2877
THC0290_1790 deoD CDS 2074226:2075038 - A706 B201 C52 8.64 -1.60 Purine-nucleoside phosphorylase 2978 1535
THC0290_N_1209 intra 2082313:2082391 - A1088 B365 C107 5.59 -3.46 new transcription segment 2991 2091
THC0290_1797 CDS 2082392:2083183 - A1088 B365 C107 9.16 -2.40 Protein of unknown function precursor 2992 2090
THC0290_1798 CDS 2083190:2083714 - A1088 B365 C107 9.68 -1.91 Protein of unknown function containing ankyrin repeat signature 2993 2103
THC0290_1800 CDS 2084766:2085770 - A1088 B365 C107 10.16 -2.24 Protein of unknown function 2995 2105
THC0290_1801 CDS 2085799:2087151 - A1088 B365 C107 8.57 -3.38 Protein of unknown function 2996 2102
THC0290_1802 CDS 2087189:2087410 - A1088 B365 C107 10.71 -1.45 Hypothetical protein 2997 2100
THC0290_1805 CDS 2088958:2090196 + A1088 B365 C107 13.62 -1.17 Protein of unknown function 3000 2097
THC0290_N_1210 intra 2090197:2090249 + A1088 B365 C107 10.48 -2.52 new transcription segment 3001 2093
THC0290_1806 irpA CDS 2090250:2091365 + A1088 B365 C107 13.34 -1.42 Iron-regulated protein A precursor 3002 2098
THC0290_1807 CDS 2091368:2092735 + A483 B172 C44 10.32 -1.69 Probable vitamin K-dependent gamma-carboxylase 3003 636
THC0290_1811 CDS 2096360:2096578 - A1088 B365 C107 9.34 -2.20 Protein of unknown function 3010 2096
THC0290_1812 (hmuY) CDS 2096691:2097335 - A1088 B365 C107 13.50 -1.99 Putative heme binding lipoprotein precursor 3012 2089
THC0290_1813 CDS 2097360:2097836 - A1088 B365 C107 12.65 -2.21 Probable transmembrane protein of unknown function 3013 2086
THC0290_1816 CDS 2100947:2101285 + A1088 B365 C107 13.67 -1.59 Protein of unknown function 3016 2087
THC0290_1830 CDS 2122074:2123462 + A1765 B546 C143 10.89 1.39 Protein of unknown function 3035 3496
THC0290_1834 CDS 2126856:2127110 - A1393 B478 C139 8.86 2.80 Hypothetical protein 3040 2567
THC0290_1836 CDS 2130208:2130960 - A1768 B546 C143 11.94 1.32 Two-component system response regulatory protein, LytTR family 3042 3615
THC0290_tRNA_0038 tRNA 2134524:2134600 - A762 B226 C62 14.71 1.51 transfer RNA-Ala 3046 1641
THC0290_N_1239 intra 2152005:2152052 + A1332 B461 C133 5.62 2.31 new transcription segment 3078 2481
THC0290_1868 CDS 2168095:2168679 - A1749 B546 C143 12.31 1.17 RNA polymerase ECF-type sigma factor 3109 3328
THC0290_N_1254 5prime 2168680:2168760 - A1769 B546 C143 14.26 3.24 new transcription segment 3110 3753
THC0290_1879 udk CDS 2186229:2186837 + A335 B125 C35 11.46 1.29 Uridine kinase 3129 435
THC0290_1880 CDS 2186995:2187318 + A889 B276 C76 11.53 1.40 Probable transmembrane protein of unknown function. Putative septum formation initiator 3132 1816
THC0290_N_1272 5prime 2202131:2202187 - A1707 B546 C143 13.21 2.19 new transcription segment 3156 3128
THC0290_miscRNA_0049 Rfp82 misc_RNA 2215650:2215756 + A1768 B546 C143 15.26 1.83 6S-Flavo RNA 3178 3730
THC0290_1910 CDS 2220154:2221044 + A170 B63 C19 9.67 -1.02 Rhomboid family protein 3183 211
THC0290_1912 CDS 2222462:2222740 + A1437 B499 C142 11.75 1.82 Hypothetical protein 3188 2622
THC0290_1913 CDS 2222771:2223451 - A1768 B546 C143 14.27 2.27 Probable transcriptional regulatory protein, Crp/Fnr family 3190 3678
THC0290_1914 ccoI CDS 2223560:2225938 + A701 B199 C52 8.35 -2.05 Probable cytochrome cbb3 oxidase maturation protein CcoI 3191 1528
THC0290_1915 ccoS CDS 2226015:2226212 + A700 B199 C52 10.42 -3.46 Probable cytochrome cbb3 oxidase maturation protein CcoS 3193 1526
THC0290_1916 CDS 2226196:2227179 + A700 B199 C52 10.07 -3.53 Probable acyl-[acyl-carrier-protein] desaturase 3194 1527
THC0290_1917 ccoN/ccoO CDS 2227239:2229419 + A700 B199 C52 10.63 -3.06 Cytochrome c oxidase, cbb3-type, subunit I and II 3196 1521
THC0290_N_1292 intra 2229420:2229495 + A700 B199 C52 10.39 -3.97 new transcription segment 3197 1520
THC0290_1918 ccoQ CDS 2229496:2229687 + A700 B199 C52 9.99 -4.10 Cytochrome c oxidase, cbb3-type, subunit IV 3198 1519
THC0290_1919 ccoP CDS 2229694:2230629 + A700 B199 C52 10.53 -4.03 Cytochrome c oxidase, cbb3-type, subunit III 3199 1522
THC0290_1920 ccoG CDS 2230634:2232052 + A700 B199 C52 9.57 -4.33 Probable cytochrome cbb3 oxidase maturation protein CcoG 3200 1518
THC0290_1921 ccoH CDS 2232073:2232522 + A698 B198 C52 10.19 -2.57 Probable cytochrome cbb3 oxidase maturation protein CcoH 3201 1514
THC0290_N_1293 intra 2232523:2232613 + A698 B198 C52 9.94 -2.93 new transcription segment 3202 1513
THC0290_1922 CDS 2232614:2233318 + A698 B198 C52 9.82 -2.79 Probable transmembrane protein of unknown function 3203 1515
THC0290_1923 CDS 2233345:2233575 + A698 B198 C52 9.99 -2.56 Protein of unknown function 3204 1512
THC0290_N_1297 repeated_region 2239621:2239993 - A847 B256 C70 7.40 1.30 new transcription segment 3210 1767
THC0290_N_1298 3prime 2240124:2240177 - A297 B110 C31 5.31 2.36 new transcription segment 3211 382
THC0290_N_1300 5prime 2252602:2252830 - A1603 B535 C143 14.18 1.46 new transcription segment 3217 2885
THC0290_N_1305 3prime 2255500:2255565 - A636 B183 C44 6.15 -4.40 new transcription segment 3224 1374
THC0290_tRNA_0041 tRNA 2267163:2267236 - A1769 B546 C143 12.68 2.08 transfer RNA-Trp 3237 3758
THC0290_tRNA_0043 tRNA 2268699:2268782 - A1769 B546 C143 13.05 2.41 transfer RNA-Tyr 3243 3764
THC0290_tRNA_0044 tRNA 2268921:2268997 - A1769 B546 C143 13.89 2.72 transfer RNA-Thr 3245 3767
THC0290_1946 xerC CDS 2269424:2270320 - A1043 B344 C102 10.94 1.61 Tyrosine recombinase XerC 3248 2007
THC0290_1950 CDS 2272914:2273141 - A1762 B546 C143 12.87 2.07 Hypothetical protein 3255 3419
THC0290_N_1318 5prime 2273142:2273206 - A1768 B546 C143 14.56 2.29 new transcription segment 3256 3660
THC0290_1955 CDS 2279501:2281108 - A256 B91 C27 14.59 -1.05 SusD/RagB family lipoprotein precursor 3266 336
THC0290_N_1334 5prime 2296507:2296565 - A1768 B546 C143 13.24 1.60 new transcription segment 3290 3713
THC0290_N_1335 5prime 2299884:2300001 - A1707 B546 C143 12.41 1.90 new transcription segment 3295 3129
THC0290_N_1339 5prime 2304591:2304827 - A1768 B546 C143 10.57 2.91 new transcription segment 3303 3622
THC0290_1980 CDS 2308935:2309735 + A385 B146 C41 10.85 1.11 Pseudouridylate synthase 3310 493
THC0290_1984 CDS 2311541:2311834 + A1768 B546 C143 13.39 3.14 Protein of unknown function 3316 3619
THC0290_1985 CDS 2311840:2312199 + A1768 B546 C143 12.49 3.06 Probable transcriptional regulator, XRE family 3317 3620
THC0290_1988 CDS 2314643:2314909 - A1747 B546 C143 12.02 1.26 Protein of unknown function 3322 3252
THC0290_1989 CDS 2314906:2315157 - A1747 B546 C143 12.13 1.41 Hypothetical protein 3323 3253
THC0290_1990 CDS 2315256:2315495 + A1768 B546 C143 12.02 1.02 Protein of unknown function 3324 3715
THC0290_2001 CDS 2326865:2327770 - A1568 B528 C143 8.78 1.22 Probable peptidase 3339 2836
THC0290_2017 CDS 2343757:2344968 - A601 B183 C44 7.52 -1.67 Protein of unknown function 3357 1151
THC0290_N_1355 3prime 2356042:2356382 - A1088 B365 C107 9.50 -2.76 new transcription segment 3371 2084
THC0290_2029 CDS 2356383:2357288 - A1088 B365 C107 11.60 -2.13 Protein of unknown function precursor 3372 2083
THC0290_2031 CDS 2358462:2359160 + A1088 B365 C107 8.84 -2.33 Hypothetical protein precursor 3374 2099
THC0290_2056 recR CDS 2389224:2389844 - A1768 B546 C143 9.71 1.07 Recombination protein RecR 3408 3674
THC0290_N_1373 Rfp85 indep 2396881:2397005 + A1689 B545 C143 7.18 2.19 new transcription segment 3424 3096
THC0290_2068 rpoA CDS 2400410:2401402 - A599 B183 C44 13.38 -1.07 DNA-directed RNA polymerase alpha subunit RpoA 3432 1016
THC0290_N_1378 intra 2402033:2402123 - A599 B183 C44 13.86 -1.18 new transcription segment 3434 1015
THC0290_2075 rplO CDS 2404585:2405037 - A599 B183 C44 13.86 -1.01 50S ribosomal protein L15 3440 1012
THC0290_2077 rpsE CDS 2405245:2405769 - A599 B183 C44 14.34 -1.28 30S ribosomal protein S5 3442 1032
THC0290_2078 rplR CDS 2405776:2406126 - A599 B183 C44 14.26 -1.24 50S ribosomal protein L18 3443 1033
THC0290_2090 rpsS CDS 2410871:2411149 - A599 B183 C44 14.05 -1.06 30S ribosomal protein S19 3456 1040
THC0290_2096 fusA CDS 2413957:2416113 - A599 B183 C44 13.51 -1.02 Elongation factor G (EF-G) 3463 1037
THC0290_N_1383 intra 2419137:2419200 + A169 B62 C19 6.56 -3.87 new transcription segment 3469 210
THC0290_N_1390 intra 2428899:2428992 - A601 B183 C44 7.44 -1.31 new transcription segment 3483 1138
THC0290_2111 CDS 2434311:2434772 + A1795 B549 C143 11.88 1.47 Protein of unknown function containing LysM domain 3489 3858
THC0290_N_1401 3prime 2446839:2447017 + A1307 B446 C130 5.56 2.93 new transcription segment 3516 2449
THC0290_N_1405 5prime 2456890:2457173 + A1699 B546 C143 11.03 1.23 new transcription segment 3527 3112
THC0290_N_1411 3prime 2464809:2464887 - A454 B168 C44 5.95 -3.03 new transcription segment 3541 590
THC0290_N_1413 3prime 2468143:2468214 - A508 B178 C44 4.73 -1.73 new transcription segment 3546 679
THC0290_tRNA_0045 tRNA 2481345:2481421 - A762 B226 C62 14.73 1.47 transfer RNA-Ala 3557 1638
THC0290_2157 CDS 2491341:2491841 + A483 B172 C44 10.05 -1.46 Protein of unknown function 3573 640
THC0290_N_1422 intra 2491842:2492026 + A483 B172 C44 10.82 -1.02 new transcription segment 3574 641
THC0290_2161 fpo2 CDS 2498317:2498547 - A622 B183 C44 11.08 -1.09 Probable transmembrane protein of unknown function Fpo2 3581 1334
THC0290_2174 nuoN CDS 2512490:2513857 - A601 B183 C44 6.70 -3.14 NADH dehydrogenase I, N subunit 3601 1184
THC0290_2191 haaO CDS 2535272:2535790 - A1596 B534 C143 10.91 1.13 3-hydroxyanthranilate 3,4-dioxygenase 3624 2872
THC0290_2197 gene 2542796:2543170 - A1768 B546 C143 11.38 1.53 protein of unknown function (fragment) 3635 3705
THC0290_N_1446 repeated_region 2543171:2543514 - A996 B315 C85 5.03 -2.16 new transcription segment 3636 1951
THC0290_N_1454 5prime 2552315:2552427 + A1431 B497 C142 12.65 2.02 new transcription segment 3649 2614
THC0290_2205 CDS 2554179:2554631 - A1553 B524 C143 12.39 1.36 Probable 6-pyruvoyltetrahydrobiopterin synthase 3653 2812
THC0290_2250 CDS 2602642:2602947 - A1768 B546 C143 8.16 1.99 Truncated transposase IS982 family central region 3711 3578
THC0290_N_1483 3prime 2620163:2620219 - A299 B110 C31 4.95 1.93 new transcription segment 3737 384
THC0290_N_1484 intra 2624481:2624662 + A1768 B546 C143 12.43 1.74 new transcription segment 3741 3632
THC0290_2270 CDS 2627503:2627874 - A1768 B546 C143 9.67 1.25 Protein of unknown function (fragment) 3745 3617
THC0290_2271 CDS 2627871:2628104 - A1575 B530 C143 8.86 1.10 Protein of unknown function (fragment) 3746 2845
THC0290_miscRNA_0050 misc_RNA 2654507:2654611 - A1728 B546 C143 11.77 1.21 TPP riboswitch [THI element] 3790 3191
THC0290_N_1503 intra 2654612:2654704 - A140 B55 C18 5.40 -3.03 new transcription segment 3791 179
THC0290_2297 lpxH CDS 2654705:2655457 - A300 B111 C32 9.85 1.36 UDP-2,3-diacylglucosamine hydrolase 3792 385
THC0290_2298 CDS 2655534:2656004 - A528 B180 C44 10.21 1.54 Probable transcriptional regulator, AsnC family 3794 715
THC0290_2300 CDS 2657609:2657995 + A1432 B497 C142 11.18 1.58 Probable transmembrane protein of unknown function 3797 2615
THC0290_2309 ribE CDS 2665529:2666125 + A1475 B507 C142 11.53 1.60 Riboflavin synthase, alpha subunit 3812 2674
THC0290_N_1518 3prime 2672322:2672406 - A620 B183 C44 5.77 -3.70 new transcription segment 3825 1329
THC0290_N_1519 intra 2675960:2676041 - A1708 B546 C143 14.13 1.13 new transcription segment 3829 3132
THC0290_2320 sufA CDS 2676042:2676371 - A1708 B546 C143 14.73 1.51 Scaffold protein for Fe-S assembly, SufA 3830 3131
THC0290_2325 CDS 2681862:2682191 - A1596 B534 C143 9.93 1.14 Probable ferredoxin 3838 2871
THC0290_N_1524 3prime 2681866:2681941 + A585 B183 C44 5.60 2.81 new transcription segment 3839 911
THC0290_tRNA_0048 tRNA 2682256:2682332 + A1769 B546 C143 11.84 2.50 transfer RNA-Ala 3840 3750
THC0290_N_1525 3prime 2682333:2682395 + A1769 B546 C143 9.62 2.67 new transcription segment 3841 3788
THC0290_2326 CDS 2682438:2685902 - A681 B190 C47 12.54 -1.06 Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein 3843 1473
THC0290_2332 CDS 2690655:2691227 - A1762 B546 C143 12.26 1.43 Hypothetical protein precursor 3852 3427
THC0290_N_1534 3prime 2697036:2697334 - A658 B185 C45 12.03 -1.17 new transcription segment 3861 1430
THC0290_2336 CDS 2697335:2699209 - A659 B185 C45 12.25 -1.01 Probable outer membrane protein precursor, OmpA family 3862 1432
THC0290_2337 porP CDS 2699227:2700144 - A659 B185 C45 12.14 -1.09 Protein of unknown function precursor PorP 3863 1433
THC0290_N_1535 intra 2700145:2700215 - A659 B185 C45 12.91 -1.15 new transcription segment 3864 1431
THC0290_N_1540 3prime 2716285:2716441 + A220 B81 C25 4.84 -1.98 new transcription segment 3878 281
THC0290_2348 CDS 2717326:2717880 + A1135 B380 C111 11.87 1.12 Hypothetical protein precursor 3881 2167
THC0290_2349 CDS 2718086:2718493 - A1187 B406 C122 13.82 -1.09 Probable lipoprotein precursor 3884 2226
THC0290_2350 CDS 2718538:2719650 - A1187 B406 C122 14.35 -1.07 Probable lipoprotein precursor 3885 2227
THC0290_2359 CDS 2729659:2730384 - A1768 B546 C143 11.14 1.57 Putative transcriptional regulator 3897 3640
THC0290_tRNA_0049 tRNA 2730483:2730558 + A1769 B546 C143 10.21 2.03 transfer RNA-Phe 3898 3757
THC0290_2360 CDS 2730709:2731023 - A1762 B546 C143 10.60 1.77 Hypothetical protein 3901 3428
THC0290_N_1562 intra 2743411:2743569 - A998 B317 C86 9.14 1.27 new transcription segment 3924 1953
THC0290_N_1567 5prime 2750626:2750789 - A1490 B510 C143 10.50 1.06 new transcription segment 3936 2698
THC0290_N_1569 3prime 2751082:2751294 - A646 B183 C44 12.61 -1.13 new transcription segment 3938 1414
THC0290_2379 atpG CDS 2751295:2752155 - A646 B183 C44 12.70 -1.13 ATP synthase gamma subunit 3939 1415
THC0290_N_1570 intra 2752156:2752260 - A646 B183 C44 12.03 -1.29 new transcription segment 3940 1413
THC0290_2380 atpA CDS 2752261:2753838 - A646 B183 C44 12.88 -1.17 ATP synthase alpha subunit 3941 1416
THC0290_2381 atpH CDS 2753853:2754386 - A646 B183 C44 12.35 -1.38 ATP synthase delta subunit 3942 1411
THC0290_2382 atpF CDS 2754389:2754889 - A646 B183 C44 12.88 -1.05 ATP synthase B subunit 3943 1412
THC0290_N_1571 intra 2754890:2754974 - A807 B244 C67 5.51 -3.24 new transcription segment 3944 1704
THC0290_N_1573 Rfp87 indep 2762770:2763055 - A1768 B546 C143 12.12 2.01 new transcription segment 3954 3595
THC0290_2396 capK CDS 2768428:2769762 + A1466 B506 C142 9.09 1.67 Putative capsular polysaccharide biosynthesis protein CapK 3966 2660
THC0290_2397 CDS 2769734:2770507 - A580 B183 C44 8.32 1.15 Glycosyl transferase, group 2 family protein 3967 880
THC0290_2405 CDS 2778394:2778873 - A1432 B497 C142 10.89 1.62 Probable transmembrane protein of unknown function 3975 2616
THC0290_2406 CDS 2779028:2779204 + A1768 B546 C143 15.01 1.43 Putative Sec-independent protein translocase (twin-arginine translocation protein) 3976 3725
THC0290_2410 rpiB CDS 2783138:2783566 - A1599 B535 C143 12.87 1.27 Putative ribose 5-phosphate isomerase 3981 2876