Differential expression: Low temperature [Temp10C.vs.Ctrl]

Differentially expressed genes in cells grown at 10°C relative to 18°C (OD600nm=0.4, TYES at 200 rpm).

List of differentially expressed genomic elements (CDS and newly identified RNA elements).
Statistical analysis was performed with the limma package. Genes were considered as differentially expressed with a log2-fold change ⩾ 1 and a false discovery rate ⩽ 0.05.

Reference samples: CS3_a, CS3_c
Test samples: Temp10C_a, Temp10C_c

Locus Tag Name (v2) Feature type Location Clusters Base Expr. Delta Expr. Annotation Chromosome order Clusters order
THC0290_N_0016 3prime 21441:22155 - A731 B210 C55 7.21 -1.07 new transcription segment 31 1600
THC0290_N_0020 5prime 25333:25398 + A1254 B420 C125 4.64 -1.20 new transcription segment 39 2378
THC0290_N_0076 5prime 131417:131569 + A205 B75 C24 11.34 -2.30 new transcription segment 177 256
THC0290_0102 CDS 131570:132853 + A204 B75 C24 12.07 -2.45 Protein of unknown function 178 252
THC0290_N_0077 intra 132854:133118 + A205 B75 C24 11.08 -2.92 new transcription segment 179 257
THC0290_0103 CDS 133119:133640 + A204 B75 C24 12.04 -2.73 Protein of unknown function precursor 180 254
THC0290_0104 CDS 133660:134139 + A204 B75 C24 12.56 -2.46 Probable lipoprotein precursor 181 255
THC0290_0105 CDS 134151:135113 + A204 B75 C24 11.84 -2.82 Protein of unknown function precursor 182 253
THC0290_0106 CDS 135128:136084 + A204 B75 C24 12.20 -2.75 Protein of unknown function precursor 183 251
THC0290_0173 CDS 217635:218969 - A1083 B365 C107 14.04 -1.17 Probable cell surface protein (Leucine-rich repeat protein) precursor 301 2069
THC0290_0174 CDS 219283:220551 - A1083 B365 C107 13.59 -1.23 Probable cell surface protein (Leucine-rich repeat protein) precursor 302 2072
THC0290_0176 CDS 221575:222702 - A1083 B365 C107 13.64 -1.23 Probable cell surface protein (Leucine-rich repeat protein) precursor 304 2070
THC0290_0178 CDS 224965:225888 - A1083 B365 C107 13.41 -1.18 Probable cell surface protein (Leucine-rich repeat protein) precursor 308 2067
THC0290_0181 CDS 228393:229796 - A1083 B365 C107 12.59 -1.31 Probable cell surface protein (Leucine-rich repeat protein) precursor 311 2060
THC0290_N_0142 repeated_region 229797:230072 - A1083 B365 C107 10.53 -1.36 new transcription segment 312 2062
THC0290_0182 CDS 230123:231112 - A1083 B365 C107 10.43 -1.87 Probable cell surface protein (Leucine-rich repeat protein) precursor 313 2056
THC0290_0183 CDS 231127:232047 - A1083 B365 C107 12.42 -1.35 Probable cell surface protein (Leucine-rich repeat protein) precursor 314 2057
THC0290_0186 CDS 234136:235122 - A1088 B365 C107 10.22 -1.21 Probable cell surface protein (Leucine-rich repeat protein) precursor 317 2085
THC0290_0265 CDS 323507:323950 + A1756 B546 C143 5.83 -1.54 Hypothetical protein 451 3361
THC0290_N_0207 3prime 334509:334577 - A298 B110 C31 6.81 1.93 new transcription segment 469 383
THC0290_N_0366 intra 613818:613961 + A1818 B557 C145 5.68 -1.34 new transcription segment 846 3909
THC0290_0681 CDS 817138:819144 + A1674 B543 C143 10.46 1.59 Probable TonB-dependent outer membrane receptor precursor 1148 3071
THC0290_0682 CDS 819184:819525 + A1674 B543 C143 10.34 1.21 Protein of unknown function 1149 3069
THC0290_0684 sulP CDS 819971:821572 + A1674 B543 C143 12.25 1.30 Probable sulfate permease 1152 3076
THC0290_0685 cynT CDS 821595:822230 + A1674 B543 C143 12.52 1.14 Carbonic anhydrase 1153 3077
THC0290_0718 CDS 855109:855891 + A557 B183 C44 9.41 -1.01 Probable ABC-type iron(III)-transport system, ATPase component 1209 813
THC0290_0901 CDS 1059740:1062964 + A1198 B413 C124 6.23 1.26 Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein 1514 2245
THC0290_0949 CDS 1121975:1122373 - A1520 B521 C143 8.56 2.72 Protein of unknown function 1601 2752
THC0290_1016 kdpF CDS 1196475:1196552 + A1628 B539 C143 4.73 1.60 Potassium-transporting ATPase F subunit 1712 2941
THC0290_1017 kdpA CDS 1196669:1198390 + A1628 B539 C143 5.24 1.83 Potassium-transporting ATPase A subunit 1713 2942
THC0290_1018 kdpB CDS 1198491:1200524 + A1628 B539 C143 5.42 1.37 Potassium-transporting ATPase B subunit 1714 2943
THC0290_1054 CDS 1231465:1232691 - A1765 B546 C143 7.97 -1.06 Protein of unknown function precursor containing a C-terminal secretion signal 1769 3479
THC0290_1055 CDS 1233132:1235285 + A556 B183 C44 10.83 -1.31 Probable outer membrane protein precursor 1770 805
THC0290_1203 CDS 1386310:1386462 + A1311 B450 C132 6.22 1.44 Conserved exported protein of unknown function 1963 2453
THC0290_1204 CDS 1386496:1386726 + A1768 B546 C143 8.39 1.13 Hypothetical protein 1964 3689
THC0290_1280 CDS 1477371:1479464 + A498 B175 C44 9.87 1.02 Probable phosphoglycerol transferase 2083 665
THC0290_N_0843 Rfp58 indep 1500231:1500590 + A1779 B546 C143 5.54 -1.02 new transcription segment 2121 3811
THC0290_1332 CDS 1537097:1537567 + A1763 B546 C143 8.91 1.37 Protein of unknown function 2157 3441
THC0290_1335 CDS 1539932:1540345 + A1449 B502 C142 9.54 1.13 Probable two-component system response regulatory protein 2161 2640
THC0290_N_0885 intra 1606920:1607067 + A1243 B419 C125 5.74 -1.02 new transcription segment 2260 2326
THC0290_1543 CDS 1797232:1798140 + A1765 B546 C143 9.89 1.09 Probable nucleoside-diphosphate sugar epimerase 2537 3481
THC0290_1634 CDS 1896238:1896348 + A1760 B546 C143 9.96 1.12 Hypothetical protein 2705 3372
THC0290_1675 CDS 1943090:1944706 - A1055 B348 C104 9.05 -1.89 Probable asparagine synthetase [glutamine-hydrolyzing] 2775 2022
THC0290_N_1142 Rfp75 indep 1963759:1963927 - A1769 B546 C143 7.19 -1.42 new transcription segment 2808 3743
THC0290_1706 CDS 1979849:1980568 + A608 B183 C44 9.89 1.02 Hypothetical protein 2834 1263
THC0290_1707 CDS 1980570:1981727 + A532 B180 C44 9.80 1.01 Probable type I restriction-modification system, DNA specificity domain protein 2835 724
THC0290_1786 CDS 2068911:2069726 + A1795 B549 C143 8.65 1.27 Probable transmembrane protein of unknown function 2972 3869
THC0290_N_1336 intra 2301544:2301764 + A1587 B532 C143 10.18 -1.79 new transcription segment 3298 2860
THC0290_N_1414 5prime 2473389:2473464 + A1749 B546 C143 9.79 -1.57 new transcription segment 3549 3324
THC0290_2156 CDS 2490693:2491313 + A1086 B365 C107 10.47 -1.24 Protein of unknown function precursor 3572 2077
THC0290_2157 CDS 2491341:2491841 + A483 B172 C44 10.28 -1.30 Protein of unknown function 3573 640
THC0290_N_1422 intra 2491842:2492026 + A483 B172 C44 11.38 -1.53 new transcription segment 3574 641
THC0290_N_1443 3prime-PT 2542291:2542585 + A540 B180 C44 8.95 1.22 new transcription segment 3631 752
THC0290_N_1483 3prime 2620163:2620219 - A299 B110 C31 6.87 1.28 new transcription segment 3737 384